I think the EEPROM in AVR chips is rated at 100,000 writes.   Several people 
have tested them and most found they would survive at least 5 million writes... 
YMMV, of course.
------------------------
One write every 24 hours is still under
10K writes in a reasonable lifespan for a GPSDO. It’s a rare eeprom that is 
rated that low.                                       
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