> On Nov 19, 2017, at 3:14 PM, Stephen P. Molnar <[email protected]> wrote:
>
>
> On 11/19/2017 03:10 PM, William Ray Wing wrote:
>>> On Nov 19, 2017, at 11:36 AM, Stephen P. Molnar <[email protected]>
>>> wrote:
>>>
>>> I have written a short Python 3 script to plot three curves (one plot) of
>>> data from a FORTRAN program. Initially the code worked and produced the
>>> plot which is attached. I have also attached the code and the input data,
>>>
>> The data made it through, neither the script nor the plot did. If the
>> script really is short, perhaps you could just cut and paste it into a
>> follow-up msg. Absent that, no one here can help you.
>>
>> Thanks,
>> Bill
>>
>>> In all candor, I don't have the faintest idea as to whst the problem (or
>>> problens) might be and would greatly appreciate a pointer towards the
>>> solution.
>>>
>>> Thanks in advance.
>>>
>>> --
>>> Stephen P. Molnar, Ph.D. Life is a fuzzy set
>>> www.molecular-modeling.net Stochastic and multivariate
>>> (614)312-7528 (c)
>>> Skype: smolnar1
>>>
>>> <A_poutput.txt>_______________________________________________
>>> Tutor maillist - [email protected]
>>> To unsubscribe or change subscription options:
>>> https://mail.python.org/mailman/listinfo/tutor
>>
>
Unfortunately your mail reader/program has pasted it in as an RTF file and this
makes it almost impossible to look at in a text editor or hand to the Python
interpreter. What we see looks like the following (I’ve pasted in the first
few lines).
———————————————
Multiple_Plots_2_b.py\
\
Copyright (c) 2017 Stephen P. Molnar, Ph.D. \'a0All rights reserved.\
\
"""\
import numpy as np\
from mpl_toolkits.axes_grid1 import host_subplot\
import mpl_toolkits.axisartist as AA\
import matplotlib.pyplot as plt\
\
data = []\
name = input("Enter Molecule ID: ")\
\
name_in = name+'_poutput'\
data = np.genfromtxt(name_in)\
\
s = data[:,0]\
FTm = data[:,1] \'a0\'a0\'a0\'a0#atomic number\
FTe = data[:,2] \'a0\'a0\'a0\'a0#atomic mass\
FTc = data[:,3] \'a0\'a0\'a0\'a0#atom electron density\
\
\
fig = plt.figure(figsize=(7.6,4))\
\
host = host_subplot(111, axes_class=AA.Axes)\
plt.subplots_adjust(right=0.75)\
\
par1 = host.twinx()\
par2 = host.twinx()\
\
offset = 60\
new_fixed_axis = par2.get_grid_helper().new_fixed_axis\
par2.axis["right"] = new_fixed_axis(loc="right", axes=par2,\
\'a0\'a0\'a0\'a0\'a0\'a0\'a0\'a0\'a0\'a0\'a0\'a0\'a0\'a0\'a0\'a0\'a0\'a0\'a0\'a0\'a0\'a0\'a0\'a0\'a0\'a0\'a0\'a0\'a0\'a0\'a0\'a0\'a0\'a0\'a0\'a0\'a0\'a0\'a0offset=(offset,
0))\
\
-------------------------------
> Here it is:
>
> #!/usr/bin/env python3
> # -*- coding: utf-8 -*-
> """
> Multiple_Plots_2_b.py
>
> Copyright (c) 2017 Stephen P. Molnar, Ph.D. All rights reserved.
>
> """
> import numpy as np
> from mpl_toolkits.axes_grid1 import host_subplot
> import mpl_toolkits.axisartist as AA
> import matplotlib.pyplot as plt
>
> data = []
> name = input("Enter Molecule ID: ")
>
> name_in = name+'_poutput'
> data = np.genfromtxt(name_in)
>
> s = data[:,0]
> FTm = data[:,1] #atomic number
> FTe = data[:,2] #atomic mass
> FTc = data[:,3] #atom electron density
>
>
> fig = plt.figure(figsize=(7.6,4))
>
> host = host_subplot(111, axes_class=AA.Axes)
> plt.subplots_adjust(right=0.75)
>
> par1 = host.twinx()
> par2 = host.twinx()
>
> offset = 60
> new_fixed_axis = par2.get_grid_helper().new_fixed_axis
> par2.axis["right"] = new_fixed_axis(loc="right", axes=par2,
> offset=(offset, 0))
>
> par2.axis["right"].toggle(all=True)
>
> host.set_xlim(0, 30)
> """
> host.set_ylim(min(FTm), max(FTm))
> """
>
> host.set_xlabel("Distance ($\AA$)")
> host.set_ylabel("Atomic Number")
> par1.set_ylabel("Atom Mass")
> par2.set_ylabel("Atom Electron Density")
>
> p1, = host.plot(data[:,0], data[:,1])#, label="Atomic Number")
> p2, = par1.plot(data[:,0], data[:,2])#, label="Atom Mass")
> p3, = par2.plot(data[:,0], data[:,3])#, label="Atom Electron Density")
>
> """
> par1.set_ylim(min(FTe), max(FTe))
> par2.set_ylim(min(FTc),max(FTc))
> """
>
> #host.legend()
>
> host.axis["left"].label.set_color(p1.get_color())
> par1.axis["right"].label.set_color(p2.get_color())
> par2.axis["right"].label.set_color(p3.get_color())
>
> host.title.set_text('Molecule {0} - Molecular Transforms'.format(name))
> plt.draw()
> plt.show()
>
> name_plt = name+'-fig1.png'
> fig.savefig(name_plt,bbox_inches='tight')
>
>
> --
> Stephen P. Molnar, Ph.D. Life is a fuzzy set
> www.molecular-modeling.net Stochastic and multivariate
> (614)312-7528 (c)
> Skype: smolnar1
>
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