Dear colleagues,
Soon I'll start to use one of the powerful computers on my university as a tool
in my Ph.D. The computer does not have an internet connection and I need to
find a way to install a conda environment on it.
At first I tried to install and set the conda environment that I need in a
computer with internet connection and taking care to copy everything in a path
that is similar in the off-line computer (i.e I installed everything on
/home/henrique/bin/anaconda3 at home and tried to copy everything to
/home/henrique/bin/anaconda3 in the off-line computer - with the same .bashrc)
but when I run conda I get an error(it works on my home computer):
(deepchem) [henrique@europio qm7] $ python qm7_ANI.py
/home/henrique/bin/anaconda3/envs/deepchem/lib/python3.6/site-packages/sklearn/ensemble/weight_boosting.py:29:
DeprecationWarning: numpy.core.umath_tests is an internal NumPy module and
should not be imported. It will be removed in a future NumPy release.
from numpy.core.umath_tests import inner1d
Traceback (most recent call last):
File
"/home/henrique/bin/anaconda3/envs/deepchem/lib/python3.6/urllib/request.py",
line 1318, in do_open
encode_chunked=req.has_header('Transfer-encoding'))
File
"/home/henrique/bin/anaconda3/envs/deepchem/lib/python3.6/http/client.py", line
1239, in request
self._send_request(method, url, body, headers, encode_chunked)
File
"/home/henrique/bin/anaconda3/envs/deepchem/lib/python3.6/http/client.py", line
1285, in _send_request
self.endheaders(body, encode_chunked=encode_chunked)
File
"/home/henrique/bin/anaconda3/envs/deepchem/lib/python3.6/http/client.py", line
1234, in endheaders
self._send_output(message_body, encode_chunked=encode_chunked)
File
"/home/henrique/bin/anaconda3/envs/deepchem/lib/python3.6/http/client.py", line
1026, in _send_output
self.send(msg)
File
"/home/henrique/bin/anaconda3/envs/deepchem/lib/python3.6/http/client.py", line
964, in send
self.connect()
File
"/home/henrique/bin/anaconda3/envs/deepchem/lib/python3.6/http/client.py", line
936, in connect
(self.host,self.port), self.timeout, self.source_address)
File "/home/henrique/bin/anaconda3/envs/deepchem/lib/python3.6/socket.py",
line 704, in create_connection
for res in getaddrinfo(host, port, 0, SOCK_STREAM):
File "/home/henrique/bin/anaconda3/envs/deepchem/lib/python3.6/socket.py",
line 745, in getaddrinfo
for res in _socket.getaddrinfo(host, port, family, type, proto, flags):
socket.gaierror: [Errno -2] Name or service not known
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "qm7_ANI.py", line 15, in <module>
featurizer='BPSymmetryFunction', split='stratified', move_mean=False)
File
"/home/henrique/bin/anaconda3/envs/deepchem/lib/python3.6/site-packages/deepchem/molnet/load_function/qm7_datasets.py",
line 50, in load_qm7_from_mat
'http://deepchem.io.s3-website-us-west-1.amazonaws.com/datasets/qm7.mat'
File
"/home/henrique/bin/anaconda3/envs/deepchem/lib/python3.6/site-packages/deepchem/utils/__init__.py",
line 85, in download_url
urlretrieve(url, os.path.join(dest_dir, name))
File
"/home/henrique/bin/anaconda3/envs/deepchem/lib/python3.6/urllib/request.py",
line 248, in urlretrieve
with contextlib.closing(urlopen(url, data)) as fp:
File
"/home/henrique/bin/anaconda3/envs/deepchem/lib/python3.6/urllib/request.py",
line 223, in urlopen
return opener.open(url, data, timeout)
File
"/home/henrique/bin/anaconda3/envs/deepchem/lib/python3.6/urllib/request.py",
line 526, in open
response = self._open(req, data)
File
"/home/henrique/bin/anaconda3/envs/deepchem/lib/python3.6/urllib/request.py",
line 544, in _open
'_open', req)
File
"/home/henrique/bin/anaconda3/envs/deepchem/lib/python3.6/urllib/request.py",
line 504, in _call_chain
result = func(*args)
File
"/home/henrique/bin/anaconda3/envs/deepchem/lib/python3.6/urllib/request.py",
line 1346, in http_open
return self.do_open(http.client.HTTPConnection, req)
File
"/home/henrique/bin/anaconda3/envs/deepchem/lib/python3.6/urllib/request.py",
line 1320, in do_open
raise URLError(err)
urllib.error.URLError: <urlopen error [Errno -2] Name or service not known>
Any help is much appreciated
--
Henrique C. S. Junior
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