Confirmed, this seems to affect any installation via the "try Ubuntu"
route (rather than "install Ubuntu").  The problem is that ubiquity
drops privileges, but fails to regain them correctly before
reconfiguring certain packages.  The affected files are those which are
written by the package reconfiguration process.

Some of them will be automatically cleaned up over time and as updates
are released.  I've categorized them as follows:

daily:
/var/lib/apt/extended_states
/var/lib/apt/cdroms.list
/var/lib/apt/lists/*

any package update:
/var/cache/debconf/config.dat-old
/var/cache/debconf/config.dat
/var/cache/debconf/templates.dat-old
/var/cache/debconf/passwords.dat
/var/cache/debconf/templates.dat
/var/lib/dpkg/status-old
/var/lib/dpkg/available-old
/var/lib/dpkg/status
/var/lib/dpkg/diversions
/var/lib/dpkg/available
/var/lib/dpkg/triggers/Unincorp
/var/lib/dpkg/diversions-old

kernel update:
/initrd.img
/vmlinuz
/boot/vmlinuz-2.6.27-7-generic
/boot/initrd.img-2.6.27-7-generic
/boot/grub
/boot/grub/xfs_stage1_5
/boot/grub/jfs_stage1_5
/boot/grub/minix_stage1_5
/boot/grub/e2fs_stage1_5
/boot/grub/stage1
/boot/grub/reiserfs_stage1_5
/boot/grub/stage2
/boot/grub/default
/boot/grub/device.map
/boot/grub/fat_stage1_5
/boot/grub/installed-version

locales update:
/var/lib/belocs/hashfile.old
/var/lib/belocs/hashfile

various updates:
/var/lib/gconf/debian.defaults/%gconf-tree.xml
/var/cache/ldconfig/aux-cache
/etc/ld.so.cache

tzdata update:
/etc/localtime

don't care:
/var/log/installer
/var/log/installer/partman
/var/log/installer/initial-status.gz

would have to be fixed manually(?):
/etc/papersize
/etc/popularity-contest.conf
/etc/initramfs-tools/conf.d/resume
/etc/fstab
/etc/hosts
/etc/X11/xorg.conf
/etc/default/console-setup
/etc/default/locale
/etc/apt/apt.conf.d/00trustcdrom
/etc/apt/sources.list
/var/lib/locales/supported.d/local
/media/cdrom0
/media/cdrom1
/media/cdrom
/cdrom

-- 
Ubuntu 8.10rc Desktop amd64 - lots of files with gid 999
https://bugs.launchpad.net/bugs/288479
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