Battery preferences in both the scenarios are same.

Conky is running in both sessions.

With the age of the laptop, now the gap between battery backup available
in normal user session and root user session has increased and is some
where around 15-20 minutes. Thus normal user still continues to provide
more backup.

Hope following information helps:

Output of 'powertop' from 'root' user


PowerTOP version 1.10      (C) 2007 Intel Corporation

Cn                Avg residency       P-states (frequencies)
C0 (cpu running)        ( 6.8%)         2.00 Ghz     1.8%
polling           0.0ms ( 0.0%)         1.60 Ghz     0.0%
C1                0.0ms ( 0.0%)         1200 Mhz     0.0%
C2                0.8ms ( 0.4%)          800 Mhz    98.2%
C4                4.1ms (92.7%)

Wakeups-from-idle per second : 231.4    interval: 5.0s
Power usage (ACPI estimate): 26.0W (0.9 hours)

Top causes for wakeups:
  29.5% ( 95.0)       <interrupt> : ohci1394, i...@pci:0000:00:02.0 
  18.5% ( 59.6)           firefox : schedule_timeout (process_timeout) 
   7.5% ( 24.2)   USB device  6-1 :  USB OPTICAL MOUSE () 
   7.5% ( 24.0)       <interrupt> : uhci_hcd:usb3, uhci_hcd:usb6, HDA Intel 
   6.5% ( 20.8)         webAccess : futex_wait (hrtimer_wakeup) 
   6.2% ( 19.8)      <kernel IPI> : Rescheduling interrupts 

Suggestion: Enable SATA ALPM link power management via:
  echo min_power > /sys/class/scsi_host/host0/link_power_management_policy
or press the S key.
 Q - Quit   R - Refresh   S - SATA Link Power Management 


Output of 'top' from 'root' user:

16663 root      20   0 10184 2736 2036 S    3  0.1   0:08.40 conky              
17157 root      20   0  298m 154m  24m S    2  5.1   0:17.13 firefox            
16345 root      20   0  409m  30m 8560 S    1  1.0   0:20.70 Xorg               
16603 root      20   0 44380  20m  13m S    1  0.7   0:02.50 gnome-panel        
    1 root      20   0  3056 1884  564 S    0  0.1   0:01.46 init               
    2 root      15  -5     0    0    0 S    0  0.0   0:00.00 kthreadd           
    3 root      RT  -5     0    0    0 S    0  0.0   0:00.06 migration/0        
    4 root      15  -5     0    0    0 S    0  0.0   0:00.58 ksoftirqd/0        
    5 root      RT  -5     0    0    0 S    0  0.0   0:00.00 watchdog/0         
    6 root      RT  -5     0    0    0 S    0  0.0   0:00.06 migration/1        
    7 root      15  -5     0    0    0 S    0  0.0   0:01.96 ksoftirqd/1        
    8 root      RT  -5     0    0    0 S    0  0.0   0:00.00 watchdog/1         
    9 root      15  -5     0    0    0 S    0  0.0   0:00.12 events/0           
   10 root      15  -5     0    0    0 S    0  0.0   0:00.10 events/1           
   11 root      15  -5     0    0    0 S    0  0.0   0:00.00 khelper            
   51 root      15  -5     0    0    0 S    0  0.0   0:00.00 kintegrityd/0      
   52 root      15  -5     0    0    0 S    0  0.0   0:00.00 kintegrityd/1 


Output of 'powertop' from normal user:

     PowerTOP version 1.10      (C) 2007 Intel Corporation

Cn                Avg residency       P-states (frequencies)
C0 (cpu running)        ( 3.3%)         2.00 Ghz     0.0%
polling           0.0ms ( 0.0%)         1.60 Ghz     0.0%
C1                0.0ms ( 0.0%)         1200 Mhz     0.0%
C2                1.7ms ( 0.3%)          800 Mhz   100.0%
C4                7.3ms (96.4%)

Wakeups-from-idle per second : 134.6    interval: 5.0s
Power usage (ACPI estimate): 19.7W (1.1 hours)

Top causes for wakeups:
  47.7% ( 83.8)       <interrupt> : ohci1394, i...@pci:0000:00:02.0 
  12.0% ( 21.0)         webAccess : futex_wait (hrtimer_wakeup) 
   5.7% ( 10.0)     <kernel core> : scan_async (ehci_watchdog) 
   5.5% (  9.6)   notification-da : schedule_timeout (process_timeout)
   4.9% (  8.6)      <kernel IPI> : Rescheduling interrupts
   4.6% (  8.0)   <kernel module> : usb_hcd_poll_rh_status (rh_timer_func)

Suggestion: Enable SATA ALPM link power management via:
  echo min_power > /sys/class/scsi_host/host0/link_power_management_policy
or press the S key.

Output of 'top' from normal user:

18294 parag     20   0 10184 2692 2004 S    1  0.1   0:03.20 conky              
17978 root      20   0  405m  27m 8744 S    1  0.9   0:12.06 Xorg               
    1 root      20   0  3056 1884  564 S    0  0.1   0:01.48 init               
    2 root      15  -5     0    0    0 S    0  0.0   0:00.00 kthreadd           
    3 root      RT  -5     0    0    0 S    0  0.0   0:00.06 migration/0        
    4 root      15  -5     0    0    0 S    0  0.0   0:00.60 ksoftirqd/0        
    5 root      RT  -5     0    0    0 S    0  0.0   0:00.00 watchdog/0         
    6 root      RT  -5     0    0    0 S    0  0.0   0:00.06 migration/1        
    7 root      15  -5     0    0    0 S    0  0.0   0:02.02 ksoftirqd/1        
    8 root      RT  -5     0    0    0 S    0  0.0   0:00.00 watchdog/1         
    9 root      15  -5     0    0    0 S    0  0.0   0:00.14 events/0           
   10 root      15  -5     0    0    0 S    0  0.0   0:00.12 events/1           
   11 root      15  -5     0    0    0 S    0  0.0   0:00.00 khelper            
   51 root      15  -5     0    0    0 S    0  0.0   0:00.00 kintegrityd/0      
   52 root      15  -5     0    0    0 S    0  0.0   0:00.00 kintegrityd/1      
   54 root      15  -5     0    0    0 S    0  0.0   0:00.02 kblockd/0          
   55 root      15  -5     0    0    0 S    0  0.0   0:00.02 kblockd/1

-- 
"root" user consuming more power.
https://bugs.launchpad.net/bugs/314813
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