Mine just did essentially the same thing.  My first guess about how to
reproduce it would be to cause an upstream network glitch while it's
syncing, since that's what happened just before.  It will likely be
several days before I have time to sit down and test it though.

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ubuntuone-synchdaemon runs at 80% CPU then when applet  is used to disconnect 
the applet crashed but the synchdaemon still runs at full CPU 
https://bugs.launchpad.net/bugs/519520
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