This happens to me also, started to occur after installing/setting up gpg for 
email.
Did the log thing as suggested, parts that are probably relevant (slightly 
adjusted/anonimized):

DUPLICITY: INFO 1
DUPLICITY: . Args: /usr/bin/duplicity --include=/include-folder 
--exclude=/exclude-folder --exclude=** --gio --volsize=25 / 
smb://user@host/path --verbosity=9 --gpg-options=--no-use-agent 
--archive-dir=/home/user/.cache/deja-dup --log-fd=23

DUPLICITY: INFO 1
DUPLICITY: . Linux hostname 3.0.0-13-generic #21-Ubuntu SMP Mon Oct 17 20:18:51 
UTC 2011 x86_64 x86_64

DUPLICITY: INFO 1
DUPLICITY: . /usr/bin/python 2.7.2+ (default, Oct  4 2011, 20:06:09) 
DUPLICITY: . [GCC 4.6.1]


DUPLICITY: INFO 1
DUPLICITY: . GPG error detail: Traceback (most recent call last):
DUPLICITY: .   File "/usr/bin/duplicity", line 1359, in <module>
DUPLICITY: .     with_tempdir(main)
DUPLICITY: .   File "/usr/bin/duplicity", line 1342, in with_tempdir
DUPLICITY: .     fn()
DUPLICITY: .   File "/usr/bin/duplicity", line 1218, in main
DUPLICITY: .     sync_archive(decrypt)
DUPLICITY: .   File "/usr/bin/duplicity", line 1040, in sync_archive
DUPLICITY: .     copy_to_local(fn)
DUPLICITY: .   File "/usr/bin/duplicity", line 987, in copy_to_local
DUPLICITY: .     gpg.GzipWriteFile(src_iter, tdp.name, size=sys.maxint)
DUPLICITY: .   File "/usr/lib/python2.7/dist-packages/duplicity/gpg.py", line 
346, in GzipWriteFile
DUPLICITY: .     new_block = block_iter.next(min(128*1024, bytes_to_go))
DUPLICITY: .   File "/usr/bin/duplicity", line 970, in next
DUPLICITY: .     self.fileobj.close()
DUPLICITY: .   File "/usr/lib/python2.7/dist-packages/duplicity/dup_temp.py", 
line 214, in close
DUPLICITY: .     assert not self.fileobj.close()
DUPLICITY: .   File "/usr/lib/python2.7/dist-packages/duplicity/gpg.py", line 
213, in close
DUPLICITY: .     self.gpg_failed()
DUPLICITY: .   File "/usr/lib/python2.7/dist-packages/duplicity/gpg.py", line 
180, in gpg_failed
DUPLICITY: .     raise GPGError, msg
DUPLICITY: . GPGError: GPG Failed, see log below:
DUPLICITY: . ===== Begin GnuPG log =====
DUPLICITY: . gpg: CAST5 encrypted data
DUPLICITY: . gpg: encrypted with 1 passphrase
DUPLICITY: . gpg: block_filter 0x185ce00: read error (size=14688,a->size=14688)
DUPLICITY: . gpg: packet(6) with unknown version 72
DUPLICITY: . gpg: [don't know]: invalid packet (ctb=51)
DUPLICITY: . gpg: mdc_packet with invalid encoding
DUPLICITY: . gpg: decryption failed: invalid packet
DUPLICITY: . gpg: [don't know]: invalid packet (ctb=4a)
DUPLICITY: . gpg: block_filter: pending bytes!
DUPLICITY: . ===== End GnuPG log =====
DUPLICITY: . 


DUPLICITY: ERROR 31 GPGError
DUPLICITY: . GPGError: GPG Failed, see log below:
DUPLICITY: . ===== Begin GnuPG log =====
DUPLICITY: . gpg: CAST5 encrypted data
DUPLICITY: . gpg: encrypted with 1 passphrase
DUPLICITY: . gpg: block_filter 0x185ce00: read error (size=14688,a->size=14688)
DUPLICITY: . gpg: packet(6) with unknown version 72
DUPLICITY: . gpg: [don't know]: invalid packet (ctb=51)
DUPLICITY: . gpg: mdc_packet with invalid encoding
DUPLICITY: . gpg: decryption failed: invalid packet
DUPLICITY: . gpg: [don't know]: invalid packet (ctb=4a)
DUPLICITY: . gpg: block_filter: pending bytes!
DUPLICITY: . ===== End GnuPG log =====
DUPLICITY: . 


** (deja-dup:6311): DEBUG: DuplicityInstance.vala:196: Running the following 
duplicity (6539) command: duplicity 'cleanup' '--force' 'smb://user@host/path 
'--gio' '--verbosity=9' '--gpg-options=--no-use-agent' 
'--archive-dir=/home/user/.cache/deja-dup' '--log-fd=24'

** (deja-dup:6311): DEBUG: DuplicityInstance.vala:571: duplicity (6535)
process killed

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https://bugs.launchpad.net/bugs/883742

Title:
  Deja Dup keeps asking for password

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