Public bug reported:

If you disabled the service to start during boot using systemd:

systemctl disable mysql

The upgrade script does not work even if mysql is started manually.

ProblemType: Package
DistroRelease: Ubuntu 16.04
Package: mysql-server-5.7 5.7.12-0ubuntu1.1
Uname: Linux 4.6.2-pcipatch3-i7 x86_64
ApportVersion: 2.20.1-0ubuntu2.1
Architecture: amd64
Date: Wed Jun 22 16:31:02 2016
ErrorMessage: subprocess installed post-installation script returned error exit 
status 1
InstallationDate: Installed on 2016-05-26 (27 days ago)
InstallationMedia: Ubuntu 16.04 LTS "Xenial Xerus" - Release amd64 (20160420.1)
Logs.var.log.daemon.log:
 
MySQLConf.etc.mysql.conf.d.mysql.cnf: [mysql]
MySQLConf.etc.mysql.conf.d.mysqldump.cnf:
 [mysqldump]
 quick
 quote-names
 max_allowed_packet     = 16M
MySQLConf.etc.mysql.mysql.conf.d.mysqld_safe_syslog.cnf:
 [mysqld_safe]
 syslog
MySQLVarLibDirListing: ['sys', 'auto.cnf', 'ib_logfile0', 'ib_buffer_pool', 
'ib_logfile1', 'debian-5.7.flag', 'ibdata1', 'mysql', 'performance_schema', 
'vulns', 'ibtmp1', 'phpmyadmin']
ProcCmdline: BOOT_IMAGE=/vmlinuz-4.6.2-pcipatch3-i7 
root=/dev/mapper/ubuntu--vg-root ro quiet splash vt.handoff=7
RelatedPackageVersions:
 dpkg 1.18.4ubuntu1.1
 apt  1.2.12~ubuntu16.04.1
SourcePackage: mysql-5.7
Title: package mysql-server-5.7 5.7.12-0ubuntu1.1 failed to install/upgrade: 
subprocess installed post-installation script returned error exit status 1
UpgradeStatus: No upgrade log present (probably fresh install)
modified.conffile..etc.mysql.mysql.conf.d.mysqld.cnf: [modified]
mtime.conffile..etc.mysql.mysql.conf.d.mysqld.cnf: 2016-06-16T12:13:40.984718
upstart.mysql.override: manual

** Affects: mysql-5.7 (Ubuntu)
     Importance: Undecided
         Status: New


** Tags: amd64 apport-package need-duplicate-check xenial

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https://bugs.launchpad.net/bugs/1595208

Title:
  package mysql-server-5.7 5.7.12-0ubuntu1.1 failed to install/upgrade:
  subprocess installed post-installation script returned error exit
  status 1

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