Hi Christopher! I figured out the issue today. Turns out that the issue
is because synaptics was being used for the touchpad, but everything
else was libinput, I guess somehow those two parts don't work together
to enable middle click scrolling. Disabling synaptics by removing
/usr/share/X11/xorg.conf.d/70-synaptics.conf made everything work.

I'd been meaning to try this earlier, but wasn't sure that anything
related to synaptics should have changed in the upgrade. I had been
experiencing some other annoyances related to my touchpad recently, and
thought it was weird that these things were happening since the upgrade,
but now that I disabled it all my issues are gone. One of the issues I
was experiencing was that sometimes I would use two finger scroll on my
touchpad and then use ctrl+some key to perform some keyboard shortcut,
but because there was now inertial scrolling it would start zooming the
page instead, even though I had taken my fingers off the touchpad and
was no longer actively scrolling. I first disabled the inertia, but then
I realized that I never had inertia before (to be fair, I always used to
use trackpoint middle button scrolling so I never used two finger scroll
before) so I figured maybe something was different now. I had thought it
was weird that all my other devices were handled by libinput except for
the touchpad, and after disabling synaptics all the quirks are gone.

I'm not sure what to do about the state of the bug; perhaps it should be
moved to synaptics, or maybe it's just a broader input bug? I don't know
if 17.04 enabled synaptics where it wasn't enabled before, but I do know
that things broke after upgrading to 17.04 and synaptics was apparently
the culprit.

Thanks for your help in filing this bug! I appreciate everything you and
everyone at Canonical/Ubuntu do to make our experiences great.

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https://bugs.launchpad.net/bugs/1690443

Title:
  Trackpoint middle button scroll is not working after upgrading to
  17.04

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