Hi,
on the classpath are the libs that come with neoclipse, so geronimo and all
the neo4j-libs including neo4j-lucene-index-0.2-1.2.jar.
When I start the database in neoclipse the following messages are written:
Jan 14 18:17:02 CET 2011: XaResourceManager[./nioneo_logical.log] sorting 0 xids
Fri Jan 14 18:17:02 CET 2011: XaResourceManager[./nioneo_logical.log]
checkRecoveryComplete 0 xids
Fri Jan 14 18:17:02 CET 2011: ./neostore.relationshiptypestore.db.names rebuild
id generator, highId=5 defragged count=0
Fri Jan 14 18:17:02 CET 2011: ./neostore.propertystore.db.index.keys rebuild id
generator, highId=3 defragged count=0
Fri Jan 14 18:17:02 CET 2011: ./neostore.propertystore.db.index rebuild id
generator, highId=2 defragged count=0
Fri Jan 14 18:17:03 CET 2011: ./neostore.propertystore.db.strings rebuild id
generator, highId=1788 defragged count=0
Fri Jan 14 18:17:03 CET 2011: ./neostore.propertystore.db.arrays rebuild id
generator, highId=1 defragged count=0
Fri Jan 14 18:17:03 CET 2011: ./neostore.propertystore.db rebuild id generator,
highId=2924 defragged count=0
Fri Jan 14 18:17:03 CET 2011: ./neostore.relationshipstore.db rebuild id
generator, highId=1137 defragged count=0
Fri Jan 14 18:17:03 CET 2011: ./neostore.nodestore.db rebuild id generator,
highId=2019 defragged count=0
Fri Jan 14 18:17:03 CET 2011: ./neostore rebuild id generator, highId=4
defragged count=0
Fri Jan 14 18:17:03 CET 2011: XaResourceManager[./nioneo_logical.log] recovery
completed.
Fri Jan 14 18:17:03 CET 2011: Recovery on log [./nioneo_logical.log.1]
completed.
Fri Jan 14 18:17:03 CET 2011: Non clean shutdown detected on log
[./lucene/lucene.log.1]. Recovery started ...
Fri Jan 14 18:17:03 CET 2011: [./lucene/lucene.log.1] logVersion=0 with
committed tx=1
Fri Jan 14 18:17:03 CET 2011: [./lucene/lucene.log.1] entries found=0
lastEntryPos=16
Fri Jan 14 18:17:03 CET 2011: XaResourceManager[./lucene/lucene.log] sorting 0
xids
Fri Jan 14 18:17:03 CET 2011: XaResourceManager[./lucene/lucene.log]
checkRecoveryComplete 0 xids
Fri Jan 14 18:17:03 CET 2011: XaResourceManager[./lucene/lucene.log] recovery
completed.
Fri Jan 14 18:17:03 CET 2011: Recovery on log [./lucene/lucene.log.1] completed.
Fri Jan 14 18:17:03 CET 2011: Non clean shutdown detected on log
[./lucene-fulltext/lucene.log.1]. Recovery started ...
Fri Jan 14 18:17:03 CET 2011: [./lucene-fulltext/lucene.log.1] logVersion=0
with committed tx=1
Fri Jan 14 18:17:03 CET 2011: [./lucene-fulltext/lucene.log.1] entries found=0
lastEntryPos=16
Fri Jan 14 18:17:04 CET 2011: XaResourceManager[./lucene-fulltext/lucene.log]
sorting 0 xids
Fri Jan 14 18:17:04 CET 2011: XaResourceManager[./lucene-fulltext/lucene.log]
checkRecoveryComplete 0 xids
Fri Jan 14 18:17:04 CET 2011: XaResourceManager[./lucene-fulltext/lucene.log]
recovery completed.
Fri Jan 14 18:17:04 CET 2011: Recovery on log [./lucene-fulltext/lucene.log.1]
completed.
Fri Jan 14 18:17:04 CET 2011: Non clean shutdown detected on log
[./index/lucene.log.1]. Recovery started ...
Fri Jan 14 18:17:04 CET 2011: [./index/lucene.log.1] logVersion=0 with
committed tx=1
Fri Jan 14 18:17:04 CET 2011: Injected one phase commit, txId=2
Fri Jan 14 18:17:04 CET 2011: Injected one phase commit, txId=3
Fri Jan 14 18:17:04 CET 2011: Injected one phase commit, txId=4
Fri Jan 14 18:17:04 CET 2011: Injected two phase commit, txId=5
Fri Jan 14 18:17:04 CET 2011: Injected two phase commit, txId=6
Fri Jan 14 18:17:04 CET 2011: Failed to init extension
org.neo4j.graphdb.index.IndexProvider[lucene] Could not create data source
lucene-index[lucene-index]
org.neo4j.graphdb.TransactionFailureExtion: Could not create data source
lucene-index[lucene-index]
at
org.neo4j.kernel.impl.transaction.TxModule.registerDataSource(TxModule.java:182)
at
org.neo4j.index.impl.lucene.LuceneIndexProvider.load(LuceneIndexProvider.java:110)
at
org.neo4j.index.impl.lucene.LuceneIndexProvider.init(LuceneIndexProvider.java:94)
at
org.neo4j.kernel.KernelExtension$KernelData.initAll(KernelExtension.java:153)
at
org.neo4j.kernel.EmbeddedGraphDbImpl$2.init(EmbeddedGraphDbImpl.java:160)
at org.neo4j.kernel.GraphDbInstance.start(GraphDbInstance.java:155)
at
org.neo4j.kernel.EmbeddedGraphDbImpl.<init>(EmbeddedGraphDbImpl.java:168)
at
org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:81)
at
org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:65)
at
org.neo4j.neoclipse.graphdb.GraphDbServiceManager$Tasks$1.run(GraphDbServiceManager.java:79)
at
java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441)
at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
at java.util.concurrent.FutureTask.run(FutureTask.java:138)
at
java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
at java.lang.Thread.run(Thread.java:680)
Caused by: java.lang.reflect.InvocationTargetExtion
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
at
org.neo4j.kernel.impl.transaction.XaDataSourceManager.create(XaDataSourceManager.java:74)
at
org.neo4j.kernel.impl.transaction.TxModule.registerDataSource(TxModule.java:176)
... 15 more
Caused by: java.lang.NullPointerExtion
at
org.neo4j.index.impl.lucene.LuceneDataSource.findDocument(LuceneDataSource.java:602)
at
org.neo4j.index.impl.lucene.CommitContext.getDocument(CommitContext.java:71)
at
org.neo4j.index.impl.lucene.LuceneCommand$AddRelationshipCommand.perform(LuceneCommand.java:212)
at
org.neo4j.index.impl.lucene.LuceneTransaction.doCommit(LuceneTransaction.java:231)
at
org.neo4j.kernel.impl.transaction.xaframework.XaTransaction.commit(XaTransaction.java:319)
at
org.neo4j.kernel.impl.transaction.xaframework.XaResourceManager.injectTwoPhaseCommit(XaResourceManager.java:380)
at
org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.applyTwoPhaseCommitEntry(XaLogicalLog.java:577)
at
org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.applyEntry(XaLogicalLog.java:469)
at
org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.doInternalRecovery(XaLogicalLog.java:804)
at
org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.open(XaLogicalLog.java:274)
at
org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.open(XaLogicalLog.java:197)
at
org.neo4j.kernel.impl.transaction.xaframework.XaContainer.openLogicalLog(XaContainer.java:98)
at
org.neo4j.index.impl.lucene.LuceneDataSource.<init>(LuceneDataSource.java:207)
... 21 more
Fri Jan 14 18:17:04 CET 2011: Extension org.neo4j.kernel.KernelExtension[shell]
initialized ok
Fri Jan 14 18:17:04 CET 2011: Extension org.neo4j.kernel.KernelExtension[kernel
udc] initialized ok
Fri Jan 14 18:17:04 CET 2011: Extension org.neo4j.kernel.KernelExtension[kernel
jmx] initialized ok
Fri Jan 14 18:17:04 CET 2011: TM opening log: ./tm_tx_log.2
Fri Jan 14 18:17:04 CET 2011: TM non resolved transactions found in
./tm_tx_log.2
Am 14.01.2011 um 09:59 schrieb Johan Svensson:
> Hi,
>
> Could you provide a list of what jar files are on the classpath.
> Information in the <db-dir>/messages.log printed during startup would
> also be interesting to see.
>
> -Johan
>
> On Thu, Jan 13, 2011 at 9:23 PM, Andreas Bauer <b...@gmx.net> wrote:
>> Hi,
>>
>> now I got neoclipse running from eclipse, finally :) (BTW: adding -d32 to
>> the VM arguments in the run configuration and copying the jnilib from
>> org.eclipse.swt.cocoa.macosx does the trick)
>>
>> But when I start my database I get this error:
>>
>> org.neo4j.graphdb.TransactionFailureException: No mapping found for branchId
>> [0x162374]: No mapping found for branchId [0x162374]
>>
>> Hmm, so how do I manage to clean up the database? shutdown() won't do nor
>> the source built neoclipse... any hints?
>>
>> Regards,
>>
>> Andi
>>
>>
>> Am 13.01.2011 um 20:36 schrieb Andreas Bauer:
>>
>>> Hi,
>>>
>>> the stack trace below wasn't generated by neoclipse, but by neo4j, when I
>>> tried to run the shutdown() method.
>>>
>>> Regarding the hint build neo4j from source. Up to now I'm still struggling
>>> with getting neoclipse run from source code on my Mac ( I'm just dealing
>>> with the 32bit 64bit issue.
>>> http://www.eclipse.org/swt/faq.php#cocoa64launch, which makes me quite
>>> upset, as it additionally wastes lots of time.) So I can't say, if that
>>> helped...
>>>
>>> Cheers,
>>>
>>> Andi
>>>
>>>
>>> Am 12.01.2011 um 23:26 schrieb Andreas Bauer:
>>>
>>>> Hi,
>>>>
>>>> I use the latest stable version for mac available on the neo4j homepage
>>>> (V1.2). And no, I didn't delete anything.
>>>>
>>>> Regards,
>>>>
>>>> Andi
>>>>
>>>>
>>>> Am 12.01.2011 um 22:52 schrieb Michael Hunger:
>>>>
>>>>> Hi Andi,
>>>>>
>>>>> what version of neo4j are you running against? The latest 1.2 or sth else?
>>>>>
>>>>> And did you delete any of the files of the database?
>>>>>
>>>>> Thanks a lot
>>>>>
>>>>> Michael
>>>>>
>>>>> Am 12.01.2011 um 21:10 schrieb Andreas Bauer:
>>>>>
>>>>>> Hi,
>>>>>>
>>>>>> ok, I did that and now I get this stack trace
>>>>>>
>>>>>> 12.01.2011 21:04:57
>>>>>> org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog
>>>>>> doInternalRecovery
>>>>>> INFO: Non clean shutdown detected on log [cep/nioneo_logical.log.1].
>>>>>> Recovery started ...
>>>>>> 12.01.2011 21:05:01
>>>>>> org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog
>>>>>> doInternalRecovery
>>>>>> INFO: Non clean shutdown detected on log [cep/lucene/lucene.log.1].
>>>>>> Recovery started ...
>>>>>> 12.01.2011 21:05:01
>>>>>> org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog
>>>>>> doInternalRecovery
>>>>>> INFO: Non clean shutdown detected on log
>>>>>> [cep/lucene-fulltext/lucene.log.1]. Recovery started ...
>>>>>> 12.01.2011 21:05:01
>>>>>> org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog
>>>>>> doInternalRecovery
>>>>>> INFO: Non clean shutdown detected on log
>>>>>> [/Users/buki/Documents/workspace/Pimstr/cep/index/lucene.log.1].
>>>>>> Recovery started ...
>>>>>> org.neo4j.graphdb.TransactionFailureException: Could not create data
>>>>>> source lucene-index[lucene-index]
>>>>>> at
>>>>>> org.neo4j.kernel.impl.transaction.TxModule.registerDataSource(TxModule.java:182)
>>>>>> at
>>>>>> org.neo4j.index.impl.lucene.LuceneIndexProvider.load(LuceneIndexProvider.java:110)
>>>>>> at
>>>>>> org.neo4j.index.impl.lucene.LuceneIndexProvider.init(LuceneIndexProvider.java:94)
>>>>>> at
>>>>>> org.neo4j.kernel.KernelExtension$KernelData.initAll(KernelExtension.java:153)
>>>>>> at
>>>>>> org.neo4j.kernel.EmbeddedGraphDbImpl$2.init(EmbeddedGraphDbImpl.java:160)
>>>>>> at org.neo4j.kernel.GraphDbInstance.start(GraphDbInstance.java:155)
>>>>>> at
>>>>>> org.neo4j.kernel.EmbeddedGraphDbImpl.<init>(EmbeddedGraphDbImpl.java:168)
>>>>>> at
>>>>>> org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:81)
>>>>>> at
>>>>>> org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:65)
>>>>>> at
>>>>>> nu.buki.neo4j.SocialNetworkService.<init>(SocialNetworkService.java:46)
>>>>>> at
>>>>>> nu.buki.neo4j.SocialNetworkService.main(SocialNetworkService.java:325)
>>>>>> Caused by: java.lang.reflect.InvocationTargetException
>>>>>> at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native
>>>>>> Method)
>>>>>> at
>>>>>> sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
>>>>>> at
>>>>>> sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
>>>>>> at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
>>>>>> at
>>>>>> org.neo4j.kernel.impl.transaction.XaDataSourceManager.create(XaDataSourceManager.java:74)
>>>>>> at
>>>>>> org.neo4j.kernel.impl.transaction.TxModule.registerDataSource(TxModule.java:176)
>>>>>> ... 10 more
>>>>>> Caused by: java.lang.NullPointerException
>>>>>> at
>>>>>> org.neo4j.index.impl.lucene.LuceneDataSource.findDocument(LuceneDataSource.java:602)
>>>>>> at
>>>>>> org.neo4j.index.impl.lucene.CommitContext.getDocument(CommitContext.java:71)
>>>>>> at
>>>>>> org.neo4j.index.impl.lucene.LuceneCommand$AddRelationshipCommand.perform(LuceneCommand.java:212)
>>>>>> at
>>>>>> org.neo4j.index.impl.lucene.LuceneTransaction.doCommit(LuceneTransaction.java:231)
>>>>>> at
>>>>>> org.neo4j.kernel.impl.transaction.xaframework.XaTransaction.commit(XaTransaction.java:319)
>>>>>> at
>>>>>> org.neo4j.kernel.impl.transaction.xaframework.XaResourceManager.injectTwoPhaseCommit(XaResourceManager.java:380)
>>>>>> at
>>>>>> org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.applyTwoPhaseCommitEntry(XaLogicalLog.java:577)
>>>>>> at
>>>>>> org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.applyEntry(XaLogicalLog.java:469)
>>>>>> at
>>>>>> org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.doInternalRecovery(XaLogicalLog.java:804)
>>>>>> at
>>>>>> org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.open(XaLogicalLog.java:274)
>>>>>> at
>>>>>> org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.open(XaLogicalLog.java:197)
>>>>>> at
>>>>>> org.neo4j.kernel.impl.transaction.xaframework.XaContainer.openLogicalLog(XaContainer.java:98)
>>>>>> at
>>>>>> org.neo4j.index.impl.lucene.LuceneDataSource.<init>(LuceneDataSource.java:207)
>>>>>> ... 16 more
>>>>>> 12.01.2011 21:05:01 org.neo4j.kernel.impl.transaction.TxManager init
>>>>>> INFO: Unresolved transactions found, recovery started ...
>>>>>> Exception in thread "main"
>>>>>> org.neo4j.graphdb.TransactionFailureException: No mapping found for
>>>>>> branchId[0x162374]
>>>>>> at
>>>>>> org.neo4j.kernel.impl.transaction.XaDataSourceManager.getXaResource(XaDataSourceManager.java:186)
>>>>>> at
>>>>>> org.neo4j.kernel.impl.transaction.TxManager.getXaResource(TxManager.java:935)
>>>>>> at
>>>>>> org.neo4j.kernel.impl.transaction.TxManager.buildRecoveryInfo(TxManager.java:416)
>>>>>> at
>>>>>> org.neo4j.kernel.impl.transaction.TxManager.recover(TxManager.java:257)
>>>>>> at
>>>>>> org.neo4j.kernel.impl.transaction.TxManager.init(TxManager.java:181)
>>>>>> at org.neo4j.kernel.impl.transaction.TxModule.start(TxModule.java:85)
>>>>>> at org.neo4j.kernel.GraphDbInstance.start(GraphDbInstance.java:157)
>>>>>> at
>>>>>> org.neo4j.kernel.EmbeddedGraphDbImpl.<init>(EmbeddedGraphDbImpl.java:168)
>>>>>> at
>>>>>> org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:81)
>>>>>> at
>>>>>> org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:65)
>>>>>> at
>>>>>> nu.buki.diss.cep.data.neo4j.SocialNetworkService.<init>(SocialNetworkService.java:46)
>>>>>> at
>>>>>> nu.buki.diss.cep.data.neo4j.SocialNetworkService.main(SocialNetworkService.java:325)
>>>>>>
>>>>>> any ideas?
>>>>>>
>>>>>> Thanks,
>>>>>>
>>>>>> Andi
>>>>>>
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