Hi Alison, Good to hear the update to the official 06.00.3123 open source release resolved your problem.
Including virtuoso-users mailing list in reply so others know of solution ... Best Regards Hugh Williams Professional Services OpenLink Software Web: http://www.openlinksw.com Support: http://support.openlinksw.com Forums: http://boards.openlinksw.com/support Twitter: http://twitter.com/OpenLink On 29 Jan 2010, at 14:36, Alison Callahan wrote: > Hi Hugh, > > We updated the Virtuoso build to 6.0.0.3126, and I no longer get that > error ... the queries below execute successfully. Thanks for the > suggestion! > > Alison > > On Wed, Jan 27, 2010 at 10:55 PM, Hugh Williams > <[email protected]> wrote: >> Hi Alison, >> No update yet unfortunately ... >> Do you have access to this Virtuoso server hosting this endpoint as we would >> like to get more details on the query compilation and execution plans for >> these SPARQL queries, but this requires access to the SQL port of the server >> where these queries can be run to obtain this information as detailed at: >> http://docs.openlinksw.com/virtuoso/fn_explain.html >> and possibly tracing on the server to get more information as to the source >> of the error as detailed at: >> http://docs.openlinksw.com/virtuoso/fn_trace_on.html >> I also note that the Virtuoso Server hosting your endpoint is >> a 06.00.3118 Build from Jun 4 2009 which looks like a VOS 6.0 TP1 >> (Technology Preview) build whereas we are now on 6.0.0.3126 released >> builds, containing many fixes and would thus recommend the server be updated >> to this latest build ... >> Best Regards >> Hugh Williams >> Professional Services >> OpenLink Software >> Web: http://www.openlinksw.com >> Support: http://support.openlinksw.com >> Forums: http://boards.openlinksw.com/support >> Twitter: http://twitter.com/OpenLink >> On 27 Jan 2010, at 21:10, Alison Callahan wrote: >> >> define input:same-as "yes" >> >> PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> >> PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> >> PREFIX hybrow: <http://bio2rdf.org/hybrow:> >> PREFIX gro: <http://bio2rdf.org/gro:> >> PREFIX obo: <http://bio2rdf.org/obo:> >> PREFIX semsci: <http://semanticscience.org/resource/> >> PREFIX owl: <http://www.w3.org/2002/07/owl#> >> PREFIX bio2rdf: <http://bio2rdf.org/ns/bio2rdf:> >> >> select DISTINCT * where { >> >> ?event rdfs:label ?label . >> >> ?event rdf:type ?event_type . >> ?event_type rdfs:label ?event_type_label . >> >> ?event hybrow:is_negated ?n . >> >> ?event hybrow:agent_a ?actor . >> ?event hybrow:agent_b ?target . >> >> #check that actor and target are not genes >> OPTIONAL { >> { ?actor rdfs:subClassOf ?actor_type } UNION { ?actor >> rdf:type ?actor_type } >> OPTIONAL { >> ?actor_type obo:name ?actor_type_name . >> } >> } >> >> OPTIONAL { >> { ?target rdfs:subClassOf ?target_type } UNION { ?target rdf:type >> ?target_type } >> OPTIONAL { >> ?target_type obo:name ?target_type_name . >> } >> } >> >> } >>
