Figured this out. It was as simple as reducing the length an XmlConfig "Id" 
('ConnectorServiceRelativePathDefinition') which was too long to handle

> -----Original Message-----
> From: Stelios Kyprou [mailto:stelios.kyp...@formicary.net]
> Sent: 15 June 2011 12:35
> To: General discussion for Windows Installer XML toolset.
> Subject: [WiX-users] XmlConfig in multiple MergeModules
>
> Hello,
> I was wondering if it is possible to use XmlConfig in multiple merge modules,
> that will later be used in a single installer.
> For example, I have MergeModule1, which has:
> <Fragment>
>   <Component Id="appConfigEdit" Guid="{1F53A85E-07AD-47B5-890E-
> D6768A65E343}" Directory="MANAGEMENTTOOLFOLDER" KeyPath="yes">
>       <util:XmlConfig Id='Modules'
>                       On='install'
>                       Action='create'
>                       Sequence='1'
>                       File='[#appConfigFile]'
>
> ElementPath="//configuration/appSettings/add[\[]@key='Modules'[\]]"
>                       Node="value"
>                       Name="value"
>                       Value='[MODULES]'/>
>       <util:XmlConfig Id='ConnectorServiceRelativePathDefinition'
>                       On='install'
>                       Action='create'
>                       Sequence='2'
>                       File='[#appConfigFile]'
>
> ElementPath="//configuration/appSettings/add[\[]@key='ConnectorService
> FolderName'[\]]"
>                       Node="value"
>                       Name="value"
>                       Value='..\!(loc.ConnectorFolderName)'/>
>     </Component>
>   </Fragment>
>
> MergeModule2 has the following Component:
>
>   <Fragment>
>     <Component Id="appConfigEditing" Guid="{BC70F9B6-6CE1-4C49-8AB3-
> F7C36B616129}" Directory="CONNECTORFOLDER" KeyPath="yes">
>       <util:XmlConfig Id='ModulesDefinition'
>                       On='install'
>                       Action='create'
>                       Sequence='1'
>                       File='[#file_E1F5BC4046FD48ADB558DE10AA3F4B50]'
>
> ElementPath="//configuration/appSettings/add[\[]@key='Modules'[\]]"
>                       Node="value"
>                       Name="value"
>                       Value='[MODULES]'/>
>       <util:XmlConfig Id='GcwaRelativePathDefinition'
>                       On='install'
>                       Action='create'
>                       Sequence='2'
>                       File='[#file_E1F5BC4046FD48ADB558DE10AA3F4B50]'
>
> ElementPath="//configuration/appSettings/add[\[]@key='PrivateApiFileSer
> verRelativePath'[\]]"
>                       Node="value"
>                       Name="value"
>                       Value='..\!(loc.GcwaFolderNme)'/>
>     </Component>
>   </Fragment>
>
> This doesn't seem to work when I use both merge modules in an installer,
> and I get a warning when compiling:
> warning LGHT1055: The InstallExecuteSequence table contains an action
> 'SchedXmlConfig' which cannot be merged from the merge module 'blah'.
> This action is likely colliding with an action in the database that is being
> created.  The colliding action may have been authored in the database or
> merged in from another merge module.  If this is a standard action, it is 
> likely
> colliding due to a difference in the condition for the action in the database
> and merge module.  If this is a custom action, it should only be declared in
> the database or one merge module.
> warning LGHT1056: The CustomAction table contains a row with primary
> key(s) 'SchedXmlConfig' which cannot be merged from the merge module
> 'blah'.  This is likely due to collision of rows with the same primary key(s) 
> (but
> other different values in other columns) between the database and the
> merge module.
> warning LGHT1056: The CustomAction table contains a row with primary
> key(s) 'ExecXmlConfig' which cannot be merged from the merge module
> 'blah'.  This is likely due to collision of rows with the same primary key(s) 
> (but
> other different values in other columns) between the database and the
> merge module.
> warning LGHT1056: The CustomAction table contains a row with primary
> key(s) 'ExecXmlConfigRollback' which cannot be merged from the merge
> module 'blah'.  This is likely due to collision of rows with the same primary
> key(s) (but other different values in other columns) between the database
> and the merge module.
>
> Obviously, when I try to install I get an error saying:
> SchedXmlConfig:  Error 0x8007007a: failed to copy XmlConfig record Id
> SchedXmlConfig:  Error 0x8007007a: failed to read XmlConfig table Error
> 25540. There was a failure while configuring XML files.
>
> Any tips on how to resolve this? It's far easier to have the configuration
> within the merge module instead of the installer, since the MM's are used in
> multiple installers, and would not like to add the XmlConfig in every single
> installer if I can define it once in the MM and know that it will apply 
> anywhere
> it's used
>
> Thanks,
> Stel
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