On Friday 05 October 2007 12:13:32 pm, Richard Loosemore wrote:

> Try walking into any physics department in the world and saying "Is it 
> okay if most theories are so complicated that they dwarf the size and 
> complexity of the system that they purport to explain?"

You're conflating a theory and the mathematical mechanism necessary to apply 
it to actual situations. The theory in Newtonian physics can be specified as 
the equations F=ma and F=Gm1m2/r^2 (in vector form); but applying them 
requires a substantial amount of calculation.

You can't simply ignore the unusual case of chaotic motion, because the 
mathematical *reason* the system doesn't have a closed analytic solution is 
that chaos is possible.

> In fact, your example is beautiful, in a way.  So it turns out to be 
> necessary to resort to approximate methods, to simulations, in order to 
> deal with the MINUSCULE amout of nonlinearity/tangledness that exist in 
> the interactions of the atoms in a small molecule?  Well, whoop-dee-do!! 

Think again, Hammurabi. DFT is a quantum method that searches a space of 
linear combinations of basis functions to find a description of the electron 
density field in a molecular system. In other words, the charge of each 
electron is smeared over space in a pattern that has to satisfy Shrödinger's 
equation and also be at equilibrium with the force exerted on it by the 
charge distributions of each other electron. It's approximately like solving 
the Navier-Stokes equation for each of N different fluid flow problems 
simultaneously, under the constraint that each volume experienced a pressure 
field that was a function of the solution of every other one.

Given the solution to that system, you're in a position to evaluate the force 
on each nucleus, whereupon you can either take it one iteration of a 
molecular dynamics simulation, or one step of a conjugate gradients energy 
minimization -- and start out all over again with the electrons, which will 
have shifted, sometimes radically, due to the different forces from the 
nuclei.

Allow me to quote:

"What you said above was pure, unalloyed bullshit:  an exquisite cocktail 
of complete technical ignorance, patronizing insults and breathtaking 
arrogance.

You did not understand word one..."


Josh

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