This was a bug. The latest snapshot has the fix.
For the benefit of others, here is the custom profile that is now working:
<?xml version="1.0" encoding="ISO-8859-1" ?>
<profile>
<elements>
<elementGroup name="Stereotypes">
<element name="ENTITY">
<documentation>
Denotes this class is to be treated as a persistable entity.
</documentation>
<value>AndroEntity</value>
<appliedOnElement>class</appliedOnElement>
</element>
</elementGroup>
</elements>
</profile>
and in my andromda.xml:
<property
name="profileMappingsUri">file:${maven.src.dir}/../conf/mappings/EACustomProfileMappings.xml</property>
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