This may be an jffs2 issue. Maybe your kernel uses a compression that
the kexecboot kernel doesn't have.
So if you write much data your jffs2-driver uses the new compression to
recompress some data from the kernels.
If you only install some packages at a time, jffs2 might only use free
space and doesn't do any complex recompression stuff.
But thats just a theory ;)
Regards,
Thomas
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