Hi Anika, I don't know the answer to the first question, but you second question has a fairly simple answer: DNA sequences have to be attached to a feature in Chado, so to load a DNA sequence, you'd have to create a feature to attach it to. If all you have is a fasta file, there is a helper script in the Chado distribution call gmod_fasta2gff3.pl that will create GFF3 from the fasta file so that the feature will be created to attach the sequence to.
Scott On Mon, Jan 18, 2010 at 6:46 AM, Anika Erxleben <[email protected]> wrote: > Hi, > > we are new to Apollo and want to use it for genome annotation. We have > two questions: > > 1. We have different organisms in our chado-database. If we want to load > gff3 files from our organisms to Apollo we can not distinguish between > genes/chromosomes of these different organisms because we get one list > of chromosomes. How is it possible to sort genes via organism or to get > separated lists? > > 2. (How) is it possible to load only fasta-files into Apollo without any > annotations and gff3 files? > > We would be happy to get any help for out beginning. > > With kind regard from Germany, > Anika > > _______________________________________________ > apollo mailing list > [email protected] > http://mail.fruitfly.org/mailman/listinfo/apollo > -- ------------------------------------------------------------------------ Scott Cain, Ph. D. scott at scottcain dot net GMOD Coordinator (http://gmod.org/) 216-392-3087 Ontario Institute for Cancer Research _______________________________________________ apollo mailing list [email protected] http://mail.fruitfly.org/mailman/listinfo/apollo
