Hi Anika,
1. We have different organisms in our chado-database. If we want to load gff3 files from our organisms to Apollo we can not distinguish between genes/chromosomes of these different organisms because we get one list of chromosomes. How is it possible to sort genes via organism or to get separated lists?
Unfortunately I don't believe there currently is a mechanism for sorting a list of features by organism. I believe that most Apollo users that use Chado are connecting to instances with a single organism, so this hasn't been much of an issue in the past.
2. (How) is it possible to load only fasta-files into Apollo without any annotations and gff3 files?
There's no mechanism for just loading a FASTA file, but this can be easily accomplished by wrapping the FASTA data in an empty GFF3 with no features. Cheers, Ed _______________________________________________ apollo mailing list [email protected] http://mail.fruitfly.org/mailman/listinfo/apollo
