See earlier CRMA (v1) vignette 'Total copy number analysis (10K, 100K, 500K)'
http://groups.google.com/group/aroma-affymetrix/web/total-copy-number-analysis on how these are combined in the segmentation step after being preprocessed separately. /Henrik On Thu, Jun 18, 2009 at 8:53 AM, han<[email protected]> wrote: > > Dear Henrik: > > I am processing 500k data for cell-lines, following your CRMA2 > example, then using CBS for seqgmentation "cbs <- CbsdModel > (cesNList)"; than used ChromosomeExplorer to dsiplay, and used > "getRegions" to get segment infomation. > > My question is how can I get combined Nsp+Sty plots and segments? > > Thanks; > > Han Chang > > > > --~--~---------~--~----~------------~-------~--~----~ When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/aroma-affymetrix?hl=en -~----------~----~----~----~------~----~------~--~---
