Hi Henrik: Thanks for the help, I think that I found out why. I guess that names of Nsp and Sty CEL files must be the same except the "Nsp/Sty" part. Can "Nsp/Sty" appear any part in the file name?
By the way, what are the two dotted lines below and above the zero line. I guess that there are thresholds values, but what exactly are they and how to get the values? Thanks again. Han Chang On Jun 18, 12:16 pm, Henrik Bengtsson <[email protected]> wrote: > See earlier CRMA (v1) vignette 'Total copy number analysis (10K, 100K, 500K)' > > http://groups.google.com/group/aroma-affymetrix/web/total-copy-number... > > on how these are combined in the segmentation step after being > preprocessed separately. > > /Henrik > > On Thu, Jun 18, 2009 at 8:53 AM, han<[email protected]> wrote: > > > Dear Henrik: > > > I am processing 500k data for cell-lines, following your CRMA2 > > example, then using CBS for seqgmentation "cbs <- CbsdModel > > (cesNList)"; than used ChromosomeExplorer to dsiplay, and used > > "getRegions" to get segment infomation. > > > My question is how can I get combined Nsp+Sty plots and segments? > > > Thanks; > > > Han Chang --~--~---------~--~----~------------~-------~--~----~ When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/aroma-affymetrix?hl=en -~----------~----~----~----~------~----~------~--~---
