Hi, On Fri, Sep 24, 2010 at 1:27 PM, Vonn <vwal...@email.unc.edu> wrote: > Hi All, > > I'm using aroma to analyze CEL files from 141 SNP 6.0 arrays. I fit > the quality assessment model as follows: > > plm = RmaPlm(csR) > fit(plm, verbose = log) > qam = QualityAssessmentModel(plm) > > Then I'd like to produce NUSE and RLE plots for 10 arrays at a time. > Can someone please tell me how to do this?
plotNuse() and plotRle() for QualityAssessmentModel takes argument 'arrays', e.g. plotNuse(qam, arrays=1:10); plotNuse(qam, arrays=11:20); ... Note that the NUSE and RLE estimates are, as wanted, calculated using the complete data set, that is, the 'arrays' argument is only applied to the plotting part. /Henrik > > Thanks in advance for your response, > > Vonn > > -- > When reporting problems on aroma.affymetrix, make sure 1) to run the latest > version of the package, 2) to report the output of sessionInfo() and > traceback(), and 3) to post a complete code example. > > > You received this message because you are subscribed to the Google Groups > "aroma.affymetrix" group with website http://www.aroma-project.org/. > To post to this group, send email to aroma-affymetrix@googlegroups.com > To unsubscribe and other options, go to http://www.aroma-project.org/forum/ > -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/
