Thanks for follow up/reporting back to the list. /Henrik
On Thu, Oct 14, 2010 at 12:03 PM, Fong <fongchunc...@gmail.com> wrote: > For those interested I got a reply from the makers of the CDF files > and apparently it is an issue on their end. Here is their reply: > > We have been studying the problem and we have discovered a bug in > perfect match and mismatch probes annotation that makes Env2Cdf > function unable to use packages from GATExplorer. > > We send you GeneMapper and TranscriptMapper for HG_U133_Plus2 > with the bug corrected. In a couple of days we will upload all > the packages to GATExplorer website. > > Looks like it was an issue on their end. > > On Oct 12, 12:48 pm, Fong <fongchunc...@gmail.com> wrote: >> Hi, >> >> I've found a set of R packages (CDF) files from a service called >> GATExplorer (http://bioinfow.dep.usal.es/xgate/mapping/mapping.php? >> content=rprogram) and I am trying to create a CDF file from the R >> packages. I've followed the instructions found >> athttp://www.aroma-project.org/node/41 >> but I am running to errors. This is what happens: >> >> Env2Cdf("genemapperhgu133plus2cdf", "u1332plus_ivt_breast_A.CEL", >> overwrite=TRUE) >> Loading required package: affxparser >> Reading environment: genemapperhgu133plus2cdf. >> Reading CEL file header. >> Creating CDF list for 20172 units. >> Error in FUN(X[[1L]], ...) : no 'dimnames' attribute for array >> >> I am not too familiar with how CDF R packages work. Does anyone have >> any advice on what I could do? >> >> Thanks, >> >> Fong > > -- > When reporting problems on aroma.affymetrix, make sure 1) to run the latest > version of the package, 2) to report the output of sessionInfo() and > traceback(), and 3) to post a complete code example. > > > You received this message because you are subscribed to the Google Groups > "aroma.affymetrix" group with website http://www.aroma-project.org/. > To post to this group, send email to aroma-affymetrix@googlegroups.com > To unsubscribe and other options, go to http://www.aroma-project.org/forum/ > -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/
