Dear All, Currently I am analyzing the affyU133 plus 2.0 data. I downloaded the raw data in .CEL format and I would like to derive the gene centric values just for one gene, which means collapse the values of a probe set that corresponding to a gene in to a summary value for that gene. which command in aroma.affymetrix can fulfill this task?
Another question is that, if I download the CDF file from affyprobeMiner, which format shall I use if I want to analyze it using bioconductor? My machine is 64 bit, does that matter? Please see the following link: http://gauss.dbb.georgetown.edu/liblab/affyprobeminer/gene.html. Which one exactly shall I download? After I download the CDF file I manually install it into R. while R won't recognize it. There is some error message like: this folder has been build a in the version lower than 2.10, re-install it? What does this mean? Thanks a lot for your help. Appreciate it. best, Xiaowei -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/
