aroma-affymetrix
Thread
Date
Earlier messages
Later messages
Messages by Thread
Re: [aroma.affymetrix] ChromosomeExplorer producing zero byte png files
Henrik Bengtsson
[aroma.affymetrix] OSX 10.6 & 10.7 users: Workaround for faulty BioC build of affxparser v1.26.2
Henrik Bengtsson
[aroma.affymetrix] Re: OSX 10.6 & 10.7 users: Workaround for faulty BioC build of affxparser v1.26.2
Jorge Melendez
[aroma.affymetrix] Re: OSX 10.6 & 10.7 users: Workaround for faulty BioC build of affxparser v1.26.2
Martina Dori
Re: [aroma.affymetrix] Re: OSX 10.6 & 10.7 users: Workaround for faulty BioC build of affxparser v1.26.2
Henrik Bengtsson
Re: [aroma.affymetrix] Re: OSX 10.6 & 10.7 users: Workaround for faulty BioC build of affxparser v1.26.2
Martina Dori
[aroma.affymetrix] R crashing with new installation of R-2.14.1 and latest aroma.affymetrix
Steven McKinney
Re: [aroma.affymetrix] R crashing with new installation of R-2.14.1 and latest aroma.affymetrix
Keith Ching
[aroma.affymetrix] Create binary data files containing BAF data
Kai
Re: [aroma.affymetrix] Create binary data files containing BAF data
Henrik Bengtsson
Re: [aroma.affymetrix] Create binary data files containing BAF data
Kai
Re: [aroma.affymetrix] Create binary data files containing BAF data
Henrik Bengtsson
Re: [aroma.affymetrix] Create binary data files containing BAF data
Kai
Re: [aroma.affymetrix] Create binary data files containing BAF data
Henrik Bengtsson
[aroma.affymetrix] Error in fit(plm)
cruckert
Re: [aroma.affymetrix] Error in fit(plm)
Henrik Bengtsson
[aroma.affymetrix] aroma.affymetrix v2.4.0 released
Henrik Bengtsson
[aroma.affymetrix] An error message from running PSCBS
wisekh6
Re: [aroma.affymetrix] An error message from running PSCBS
Henrik Bengtsson
Re: [aroma.affymetrix] An error message from running PSCBS
Henrik Bengtsson
Re: [aroma.affymetrix] An error message from running PSCBS
Henrik Bengtsson
Re: [aroma.affymetrix] An error message from running PSCBS
Hoon Kim
Re: [aroma.affymetrix] An error message from running PSCBS
Henrik Bengtsson
[aroma.affymetrix] -Inf in FIRMA score matrix
rene.rotterdam
Re: [aroma.affymetrix] -Inf in FIRMA score matrix
Henrik Bengtsson
[aroma.affymetrix] error message while running segmentByPairedPSCBS
Minya Pu
Re: [aroma.affymetrix] error message while running segmentByPairedPSCBS
Henrik Bengtsson
Re: [aroma.affymetrix] error message while running segmentByPairedPSCBS
Henrik Bengtsson
[aroma.affymetrix] Receiving length(uPos) > 0 error when using CytoscanHD data
D Goode
Re: [aroma.affymetrix] Receiving length(uPos) > 0 error when using CytoscanHD data
Henrik Bengtsson
Re: [aroma.affymetrix] Receiving length(uPos) > 0 error when using CytoscanHD data
D Goode
Re: [aroma.affymetrix] Receiving length(uPos) > 0 error when using CytoscanHD data
Henrik Bengtsson
Re: [aroma.affymetrix] Receiving length(uPos) > 0 error when using CytoscanHD data
D Goode
Re: [aroma.affymetrix] Receiving length(uPos) > 0 error when using CytoscanHD data
Henrik Bengtsson
Re: [aroma.affymetrix] Receiving length(uPos) > 0 error when using CytoscanHD data
D Goode
Re: [aroma.affymetrix] Receiving length(uPos) > 0 error when using CytoscanHD data
Henrik Bengtsson
Re: [aroma.affymetrix] Receiving length(uPos) > 0 error when using CytoscanHD data
Henrik Bengtsson
[aroma.affymetrix] Using aroma with Cytoscan HD array data
D Goode
[aroma.affymetrix] Re: Using aroma with Cytoscan HD array data
D Goode
Re: [aroma.affymetrix] Using aroma with Cytoscan HD array data
Henrik Bengtsson
Re: [aroma.affymetrix] Using aroma with Cytoscan HD array data
Mike
Re: [aroma.affymetrix] Using aroma with Cytoscan HD array data
Henrik Bengtsson
Re: [aroma.affymetrix] Using aroma with Cytoscan HD array data
Mike
[aroma.affymetrix] error when converting CDF
itshuang
Re: [aroma.affymetrix] error when converting CDF
Henrik Bengtsson
Re: [aroma.affymetrix] error when converting CDF
Sean Liang
[aroma.affymetrix] error in generationg regions.xls file after gada segmentation
Zelha Nil
[aroma.affymetrix] error in creating regions.xsl file after gada segmentation
Zelha Nil
Re: [aroma.affymetrix] error in creating regions.xsl file after gada segmentation
Henrik Bengtsson
Re: [aroma.affymetrix] error in creating regions.xsl file after gada segmentation
Henrik Bengtsson
Re: [aroma.affymetrix] error in creating regions.xsl file after gada segmentation
Henrik Bengtsson
Re: [aroma.affymetrix] error in creating regions.xsl file after gada segmentation
Henrik Bengtsson
[aroma.affymetrix] Re: error in creating regions.xsl file after gada segmentation
Roger
Re: [aroma.affymetrix] Re: error in creating regions.xsl file after gada segmentation
Henrik Bengtsson
[aroma.affymetrix] HuEx cdf based on current annotation
rene.rotterdam
RE: [aroma.affymetrix] HuEx cdf based on current annotation
Steve Pederson
[aroma.affymetrix] Re: HuEx cdf based on current annotation
rene.rotterdam
[aroma.affymetrix] Re: HuEx cdf based on current annotation
rene.rotterdam
[aroma.affymetrix] "Rcache file format error" when running "doCRMAv2" with SNP6 copy number data
wisekh6
Re: [aroma.affymetrix] "Rcache file format error" when running "doCRMAv2" with SNP6 copy number data
Henrik Bengtsson
[aroma.affymetrix] Clarification of Raw CN estimates and CBS mean
Gregory W
[aroma.affymetrix] Re: Clarification of Raw CN estimates and CBS mean
Greg Wall
Re: [aroma.affymetrix] Re: Clarification of Raw CN estimates and CBS mean
Henrik Bengtsson
[aroma.affymetrix] hg18 annotation files for SNP6
wisekh6
Re: [aroma.affymetrix] hg18 annotation files for SNP6
Henrik Bengtsson
[aroma.affymetrix] Interpretation of cbsmodel output
Les Ander
Re: [aroma.affymetrix] Interpretation of cbsmodel output
Henrik Bengtsson
[aroma.affymetrix] Re: Interpretation of cbsmodel output
Les Ander
[aroma.affymetrix] Tumour/Normal copy number analysis with SNP_6 and 500K chips
Steven McKinney
Re: [aroma.affymetrix] Tumour/Normal copy number analysis with SNP_6 and 500K chips
Henrik Bengtsson
[aroma.affymetrix] Combining data from multiple chip types
Steven McKinney
Re: [aroma.affymetrix] Combining data from multiple chip types
Henrik Bengtsson
RE: [aroma.affymetrix] Combining data from multiple chip types
Steven McKinney
Re: [aroma.affymetrix] Combining data from multiple chip types
Henrik Bengtsson
RE: [aroma.affymetrix] Combining data from multiple chip types
Steven McKinney
Re: [aroma.affymetrix] Combining data from multiple chip types
Henrik Bengtsson
[aroma.affymetrix] REMOVE ME
James F. Reid
Re: [aroma.affymetrix] REMOVE ME
Henrik Bengtsson
RE: [aroma.affymetrix] Combining data from multiple chip types
Steven McKinney
Re: [aroma.affymetrix] Combining data from multiple chip types
Henrik Bengtsson
[aroma.affymetrix] GenomeWideSNP_6 annotation file acquisition issues
Steven McKinney
Re: [aroma.affymetrix] GenomeWideSNP_6 annotation file acquisition issues
Henrik Bengtsson
RE: [aroma.affymetrix] GenomeWideSNP_6 annotation file acquisition issues
Steven McKinney
[aroma.affymetrix] question about HuGene-1_0-st-v1 gene centric data
xiaowei guan
Re: [aroma.affymetrix] question about HuGene-1_0-st-v1 gene centric data
Henrik Bengtsson
Re: [aroma.affymetrix] question about HuGene-1_0-st-v1 gene centric data
xiaowei guan
Re: [aroma.affymetrix] question about HuGene-1_0-st-v1 gene centric data
Henrik Bengtsson
[aroma.affymetrix] Re: question about HuGene-1_0-st-v1 gene centric data
Heather Wick
[aroma.affymetrix] Error: length(uPos) > 0 is not TRUE
Peiyong
Re: [aroma.affymetrix] Error: length(uPos) > 0 is not TRUE
Henrik Bengtsson
Re: [aroma.affymetrix] Error: length(uPos) > 0 is not TRUE
Peiyong
Re: [aroma.affymetrix] Error: length(uPos) > 0 is not TRUE
Henrik Bengtsson
Re: [aroma.affymetrix] Error: length(uPos) > 0 is not TRUE
Henrik Bengtsson
Re: [aroma.affymetrix] Error: length(uPos) > 0 is not TRUE
Peiyong
Re: [aroma.affymetrix] Error: length(uPos) > 0 is not TRUE
Henrik Bengtsson
[aroma.affymetrix] Identify outlier density curves by cel file ID, on density plots?
evansa
Re: [aroma.affymetrix] Identify outlier density curves by cel file ID, on density plots?
Henrik Bengtsson
[aroma.affymetrix] TumorBoost and LOH
sigrid
Re: [aroma.affymetrix] TumorBoost and LOH
Henrik Bengtsson
[aroma.affymetrix] Re: TumorBoost and LOH
sigrid
[aroma.affymetrix] Conversion between AromaUnitTotalCnBinarySet and CnChipEffectSet
Kai
Re: [aroma.affymetrix] Conversion between AromaUnitTotalCnBinarySet and CnChipEffectSet
Henrik Bengtsson
[aroma.affymetrix] Re: Conversion between AromaUnitTotalCnBinarySet and CnChipEffectSet
Kai
Re: [aroma.affymetrix] Re: Conversion between AromaUnitTotalCnBinarySet and CnChipEffectSet
Henrik Bengtsson
[aroma.affymetrix] hg18 or hg19 used in ChromosomeExplorer
Kai
Re: [aroma.affymetrix] hg18 or hg19 used in ChromosomeExplorer
Henrik Bengtsson
[aroma.affymetrix] Re: hg18 or hg19 used in ChromosomeExplorer
Kai
Re: [aroma.affymetrix] Re: hg18 or hg19 used in ChromosomeExplorer
Henrik Bengtsson
Re: [aroma.affymetrix] hg18 or hg19 used in ChromosomeExplorer
Kai
Re: [aroma.affymetrix] hg18 or hg19 used in ChromosomeExplorer
Henrik Bengtsson
Re: [aroma.affymetrix] hg18 or hg19 used in ChromosomeExplorer
Kai
Re: [aroma.affymetrix] hg18 or hg19 used in ChromosomeExplorer
Henrik Bengtsson
Re: [aroma.affymetrix] hg18 or hg19 used in ChromosomeExplorer
Kai
[aroma.affymetrix] parallele computing for segmentation step using all the CPUs
Qian
Re: [aroma.affymetrix] parallele computing for segmentation step using all the CPUs
Henrik Bengtsson
[aroma.affymetrix] error in generating segmentation PNG file
Qian
Re: [aroma.affymetrix] error in generating segmentation PNG file
Henrik Bengtsson
Re: [aroma.affymetrix] error in generating segmentation PNG file
Henrik Bengtsson
[aroma.affymetrix] Paired CBS
Michelle
Re: [aroma.affymetrix] Paired CBS
Henrik Bengtsson
Re: [aroma.affymetrix] Paired CBS
Michelle
Re: [aroma.affymetrix] Paired CBS
Henrik Bengtsson
Re: [aroma.affymetrix] Paired CBS
Michelle
Re: [aroma.affymetrix] Paired CBS
Henrik Bengtsson
Re: [aroma.affymetrix] Paired CBS
Michelle
Re: [aroma.affymetrix] Paired CBS
Henrik Bengtsson
Re: [aroma.affymetrix] Paired CBS
Michelle
Re: [aroma.affymetrix] Paired CBS
Pierre Neuvial
Re: [aroma.affymetrix] Paired CBS
Michelle
Re: [aroma.affymetrix] Paired CBS
Yu Song
Re: [aroma.affymetrix] Paired CBS
Michelle
Re: [aroma.affymetrix] Paired CBS
Henrik Bengtsson
[aroma.affymetrix] accessing chip effect sets
wisekh6
Re: [aroma.affymetrix] accessing chip effect sets
Pierre Neuvial
[aroma.affymetrix] Re: accessing chip effect sets
wisekh6
Re: [aroma.affymetrix] Re: accessing chip effect sets
Henrik Bengtsson
[aroma.affymetrix] Re: accessing chip effect sets
wisekh6
[aroma.affymetrix] Re: GladModel() error
Ivan Smirnov
[aroma.affymetrix] XML error Retrieving SNP information annotations
GermanL
Re: [aroma.affymetrix] XML error Retrieving SNP information annotations
Henrik Bengtsson
[aroma.affymetrix] Re: XML error Retrieving SNP information annotations
GermanL
Re: [aroma.affymetrix] Re: XML error Retrieving SNP information annotations
Henrik Bengtsson
[aroma.affymetrix] Re: XML error Retrieving SNP information annotations
GermanL
Re: [aroma.affymetrix] Re: XML error Retrieving SNP information annotations
Henrik Bengtsson
[aroma.affymetrix] Re: XML error Retrieving SNP information annotations
GermanL
Re: [aroma.affymetrix] Re: XML error Retrieving SNP information annotations
Henrik Bengtsson
[aroma.affymetrix] question about generate GAIN/LOSS call after cbs segmentation
Qian Liu
[aroma.affymetrix] NAs in FIRMA result matrix
rene.rotterdam
[aroma.affymetrix] GladModel() error
Qian Liu
Re: [aroma.affymetrix] GladModel() error
Henrik Bengtsson
[aroma.affymetrix] Estimating tumor purity from affymetrix snp6.0 copy nrs
wisekh6
[aroma.affymetrix] ChromosomeExplorer problem-- take long time loading and haven't seen the result loaded so far.
Qian
Re: [aroma.affymetrix] ChromosomeExplorer problem-- take long time loading and haven't seen the result loaded so far.
Henrik Bengtsson
[aroma.affymetrix] Re: ChromosomeExplorer problem-- take long time loading and haven't seen the result loaded so far.
Qian
Re: [aroma.affymetrix] Re: ChromosomeExplorer problem-- take long time loading and haven't seen the result loaded so far.
Henrik Bengtsson
[aroma.affymetrix] Re: CNA frequency plot
Ivan Smirnov
Re: [aroma.affymetrix] Re: CNA frequency plot
Henrik Bengtsson
[aroma.affymetrix] Re: CNA frequency plot
Ivan Smirnov
[aroma.affymetrix] core dump error after upgrading R
Peter Kang
Re: [aroma.affymetrix] core dump error after upgrading R
Pierre Neuvial
Re: [aroma.affymetrix] core dump error after upgrading R
Henrik Bengtsson
Re: [aroma.affymetrix] core dump error after upgrading R
Peter Kang
Re: [aroma.affymetrix] core dump error after upgrading R
Henrik Bengtsson
Re: [aroma.affymetrix] core dump error after upgrading R
Peter Kang
Re: [aroma.affymetrix] core dump error after upgrading R
Henrik Bengtsson
[aroma.affymetrix] doCRMAv2 then what?
Les Ander
Re: [aroma.affymetrix] doCRMAv2 then what?
Henrik Bengtsson
[aroma.affymetrix] CRLMM algorithm
Peter Kang
Re: [aroma.affymetrix] CRLMM algorithm
Henrik Bengtsson
Re: [aroma.affymetrix] CRLMM algorithm
Henrik Bengtsson
[aroma.affymetrix] aroma.affymetrix v2.3.0 released
Henrik Bengtsson
[aroma.affymetrix] CRMA v2 step 3 probe summarization
qian.liu
Re: [aroma.affymetrix] CRMA v2 step 3 probe summarization
Henrik Bengtsson
RE: [aroma.affymetrix] CRMA v2 step 3 probe summarization
qian.liu
[aroma.affymetrix] Re: Problem with doCRMAv2 on Mapping250K_Nsp+Mapping250K_Sty chip
Ivan Smirnov
Re: [aroma.affymetrix] Re: Problem with doCRMAv2 on Mapping250K_Nsp+Mapping250K_Sty chip
Henrik Bengtsson
[aroma.affymetrix] Re: Problem with doCRMAv2 on Mapping250K_Nsp+Mapping250K_Sty chip
Ivan Smirnov
[aroma.affymetrix] Problem with doCRMAv2 on Mapping250K_Nsp+Mapping250K_Sty chip
Ivan Smirnov
Re: [aroma.affymetrix] Problem with doCRMAv2 on Mapping250K_Nsp+Mapping250K_Sty chip
Henrik Bengtsson
Re: [aroma.affymetrix] Digest for aroma-affymetrix@googlegroups.com - 2 Messages in 1 Topic
Ivan Smirnov
Re: [aroma.affymetrix] Digest for aroma-affymetrix@googlegroups.com - 2 Messages in 1 Topic
Henrik Bengtsson
Re: [aroma.affymetrix] Digest for aroma-affymetrix@googlegroups.com - 2 Messages in 1 Topic
Ivan Smirnov
Re: [aroma.affymetrix] Digest for aroma-affymetrix@googlegroups.com - 2 Messages in 1 Topic
Henrik Bengtsson
Re: [aroma.affymetrix] Digest for aroma-affymetrix@googlegroups.com - 2 Messages in 1 Topic
Oscar Rueda
Re: [aroma.affymetrix] Problem with doCRMAv2
Ivan Smirnov
Re: [aroma.affymetrix] Problem with doCRMAv2
Pierre Neuvial
[aroma.affymetrix] the time-cost of running aroma.affymetrix
marco
Re: [aroma.affymetrix] the time-cost of running aroma.affymetrix
Henrik Bengtsson
[aroma.affymetrix] Re: the time-cost of running aroma.affymetrix
marco
Re: [aroma.affymetrix] Re: the time-cost of running aroma.affymetrix
Henrik Bengtsson
[aroma.affymetrix] Re: the time-cost of running aroma.affymetrix
marco
[aroma.affymetrix] Regarding mergeGroups=FALSE / TRUE option in ExonRmaPlm()
rahul
Re: [aroma.affymetrix] Regarding mergeGroups=FALSE / TRUE option in ExonRmaPlm()
Henrik Bengtsson
[aroma.affymetrix] warnings and error message in reading affy snp6.0 cel file
Qian
Re: [aroma.affymetrix] warnings and error message in reading affy snp6.0 cel file
Pierre Neuvial
Re: [aroma.affymetrix] warnings and error message in reading affy snp6.0 cel file
Henrik Bengtsson
[aroma.affymetrix] FIRMA on subset of normalized samples
rene.rotterdam
Re: [aroma.affymetrix] FIRMA on subset of normalized samples
Henrik Bengtsson
[aroma.affymetrix] FIRMA Scores in unit, group and cell columns for HuEx-1.0
rene.rotterdam
Re: [aroma.affymetrix] FIRMA Scores in unit, group and cell columns for HuEx-1.0
Henrik Bengtsson
Earlier messages
Later messages