Hi.
First, have you tried to install the aroma framework using the following?
source("http://www.aroma-project.org/hbLite.R";);
hbInstall("aroma.affymetrix");
That should also install 'sfit' (from another server than R-forge).
Pay attention to the output when installing 'sfit' - if there's an
error, please let me know.
Second, R-forge does not provide binary builds of all packages,
specifically for 'sfit' (don't ask me why). This is probably why you
have problems installing directly from R-forge.
/Henrik
On Thu, May 12, 2011 at 8:06 PM, jasmine <pfk...@gmail.com> wrote:
> Hi,
>
> I encountered error in AllelicCrosstalkCalibration, where it says that
> sfit not found. I manually tried to install sfit but this is the error
> that I get. I am using R-2.12.2
>
>> install.packages("sfit",
>> repos="http://R-Forge.R-project.org",lib="~/R/library64";)
> trying URL 'http://R-Forge.R-project.org/src/contrib/
> sfit_0.1.9.tar.gz'
> Content type 'application/x-gzip' length 61695 bytes (60 Kb)
> opened URL
> ==================================================
> downloaded 60 Kb
>
> * installing *source* package â ...
> ** libs
> ** arch -
> gcc -std=gnu99 -I/home/user/R/R-2.12.2/include -I/usr/local/include
> -Wall -O3 -fpic -g -O2 -c cfit.c -o cfit.o
> gcc -std=gnu99 -I/home/user/R/R-2.12.2/include -I/usr/local/include
> -Wall -O3 -fpic -g -O2 -c spa.c -o spa.o
> gcc -std=gnu99 -g -O2 -Wall -O3 cli.c cfit.o spa.o -o cfit -lm
> cli.c: In function â:
> cli.c:88: warning: â may be used uninitialized in this function
> cp cfit dummy.so
> mv cfit ../inst/bin/
> mv: cannot move `cfit' to `../inst/bin/': Not a directory
> make: *** [all] Error 1
> ERROR: compilation failed for package â
> * removing â
>
> The downloaded packages are in
> â
> Warning message:
> In install.packages("sfit", repos = "http://R-Forge.R-project.org";, :
> installation of package 'sfit' had non-zero exit status
>
> Thanks.
>
> --
> When reporting problems on aroma.affymetrix, make sure 1) to run the latest
> version of the package, 2) to report the output of sessionInfo() and
> traceback(), and 3) to post a complete code example.
>
>
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>
--
When reporting problems on aroma.affymetrix, make sure 1) to run the latest
version of the package, 2) to report the output of sessionInfo() and
traceback(), and 3) to post a complete code example.
You received this message because you are subscribed to the Google Groups
"aroma.affymetrix" group with website http://www.aroma-project.org/.
To post to this group, send email to aroma-affymetrix@googlegroups.com
To unsubscribe and other options, go to http://www.aroma-project.org/forum/
