Hello: I used PdInfo2Cdf to create my own CDF for Mouse Gene ST 1.0 . However, when I compared with r3 version available from aroma.affymetrix, I see a small difference:
from r3 version AffymetrixCdfFile: Path: annotationData/chipTypes/MoGene-1_0-st-v1 Filename: MoGene-1_0-st-v1,r3.cdf Filesize: 17.63MB Chip type: MoGene-1_0-st-v1,r3 RAM: 0.00MB File format: v4 (binary; XDA) Dimension: 1050x1050 Number of cells: 1102500 Number of units: 35512 Cells per unit: 31.05 Number of QC units: 1 from my own oversion AffymetrixCdfFile: Path: annotationData/chipTypes/MoGene-1_0-st-v1 Filename: MoGene-1_0-st-v1,pd.cdf Filesize: 17.78MB Chip type: MoGene-1_0-st-v1,pd RAM: 0.00MB File format: v4 (binary; XDA) Dimension: 1050x1050 Number of cells: 1102500 Number of units: 35556 Cells per unit: 31.01 Number of QC units: 0 ...................................................... so the number of units is different, so is the number of QC units Can someone tell me what the number of QC units is and how did mine miss that? Thanks -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/
