I am getting the following error segs <- getSegments(fit); The error output
is as follows:
Please assist me in solving the following error.
regards
chromosome tcnId dhId tcnStart tcnEnd tcnNbrOfLoci tcnMean tcnNbrOfSNPs
tcnNbrOfHets
1 25 1 1 1598 16148 26 1.955 26
1
dhStart dhEnd dhNbrOfLoci dhMean c1Mean c2Mean
1 1598 16148 1 0.3252 0.6596 1.295 chromosome tcnId dhId
tcnStart tcnEnd tcnNbrOfLoci tcnMean tcnNbrOfSNPs tcnNbrOfHets
1 25 1 1 1598 16148 26 1.955 26
1
dhStart dhEnd dhNbrOfLoci dhMean c1Mean c2Mean
1 1598 16148 1 0.3252 0.6596 1.295 chromosome tcnId dhId
tcnStart tcnEnd tcnNbrOfLoci tcnMean tcnNbrOfSNPs tcnNbrOfHets
1 25 1 1 1598 16148 26 1.955 26
1
dhStart dhEnd dhNbrOfLoci dhMean c1Mean c2Mean
1 1598 16148 1 0.3252 0.6596 1.295 chromosome tcnId dhId
tcnStart tcnEnd tcnNbrOfLoci tcnMean tcnNbrOfSNPs tcnNbrOfHets
1 25 1 1 1598 16148 26 1.955 26
1
dhStart dhEnd dhNbrOfLoci dhMean c1Mean c2Mean
1 1598 16148 1 0.3252 0.6596 1.29520120418 15:49:56|
Chromosome #25 ('Chr25') of 25...done20120418 15:49:56| Merging
(independently) segmented chromosome...Error: cannot allocate vector of size
17.3 MbIn addition: There were 50 or more warnings (use warnings() to see the
first 50)20120418 15:50:43| Merging (independently) segmented
chromosome...done20120418 15:50:43| Segmenting multiple
chromosomes...done20120418 15:50:43|Segmenting paired tumor-normal signals
using Paired PSCBS...done> > segs <- getSegments(fit);Error in
UseMethod("getSegments") :
no applicable method for 'getSegments' applied to an object of class
"function"> #segs <- getSegments(fit);> print(segs);Error in print(segs) :
object 'segs' not found> #help("segmentByPairedPSCBS", package="PSCBS");> >
pairName <- paste(pair, collapse="vs");> chrTag <- sprintf("Chr%s",
seqToHumanReadable(getChromosomes(fit)));Error in UseMethod("getChromosomes") :
no applicable method for 'getChromosomes' applied to an object of class
"function"> > toPNG(pairName, tags=c(chrTag, "PairedPSCBS"), width=840,
aspectRatio=0.6, {+ plotTracks(fit);+ });Error in paste(c(name, tags),
collapse = ",") : object 'chrTag' not found
>
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