Hi,
there is no direct way to segment only non-polymorphic loci ("CN
probes")/exclude SNPs, but one approach would be to create a custom
UGP annotation data file where the genomic positions for all SNPs as
set to missing (=NA), and then explicitly use that UGP file when
segmenting the data.
/Henrik
On Sat, May 26, 2012 at 11:14 AM, yu song <[email protected]> wrote:
> Hi aroma group,
> I am wondering could we only do CBS on the CN data without SNP in it.
> In the affymetrix6 the input(raw data) contains both CN and
> SNP. How could I get the CBS result only with CN?
>
> Thanks.
>
> Best regards,
> Yu Song
>
> --
> When reporting problems on aroma.affymetrix, make sure 1) to run the latest
> version of the package, 2) to report the output of sessionInfo() and
> traceback(), and 3) to post a complete code example.
>
>
> You received this message because you are subscribed to the Google Groups
> "aroma.affymetrix" group with website http://www.aroma-project.org/.
> To post to this group, send email to [email protected]
> To unsubscribe and other options, go to http://www.aroma-project.org/forum/
--
When reporting problems on aroma.affymetrix, make sure 1) to run the latest
version of the package, 2) to report the output of sessionInfo() and
traceback(), and 3) to post a complete code example.
You received this message because you are subscribed to the Google Groups
"aroma.affymetrix" group with website http://www.aroma-project.org/.
To post to this group, send email to [email protected]
To unsubscribe and other options, go to http://www.aroma-project.org/forum/
