On Thu, Dec 6, 2012 at 5:54 AM, Maria Traka <maria.tr...@ifr.ac.uk> wrote: > Hi guys, > probably you've already given the answer somewhere but can i use > aroma.affymetrix to analyse Affymetrix 2.0 ST arrays (human and mouse)? > Presumably the same way as 1.0 arrays?
I'm not working with those myself, and I don't know the exact design details on those chips, but, yes, most likely the same way as the previous ST arrays. What is not available out of the box is a CDF file for these 2.0 ST arrays (i.e. HuGene-2_0-st-v1 and ). Unless you find such CDFs from the various groups providing custom CDFs, you need to create them yourselves. Here you've got a few options, but I would try with what's explained in how-to page 'Create a CDF file from Bioconductor Platform Design (PD) Info package', which you find via http://aroma-project.org/howtos/ /Henrik > > Thanks in advance, > Maria > > -- > When reporting problems on aroma.affymetrix, make sure 1) to run the latest > version of the package, 2) to report the output of sessionInfo() and > traceback(), and 3) to post a complete code example. > > > You received this message because you are subscribed to the Google Groups > "aroma.affymetrix" group with website http://www.aroma-project.org/. > To post to this group, send email to aroma-affymetrix@googlegroups.com > To unsubscribe and other options, go to http://www.aroma-project.org/forum/ -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/
