Addtional information. The file structure is like this, ├── annotationData │ └── chipTypes │ └── CytoScanHD_Array │ ├── CytoScanHD_Array.cdf │ └── NetAffx │ └── CytoScanHD_Array_annot.csv └── rawData └── dataset1 └── CytoScanHD_Array ├── 010213-01-NB_(CytoScanHD_Array).CEL └── 010213-01-TB_(CytoScanHD_Array).CEL
On Monday, December 15, 2014 3:51:46 PM UTC+2, Chengyu Liu wrote: > > Hi, > > I am trying to read annotation file of CytoScanHD_Array, but somehow it > could not locate it. > > I followed the tutorial in the web > http://aroma-project.org/setup/annotationData/. I am using NetAffx > Annotation Files (I could not find CDF file) . > I created folder annotationData/chipTypes/CytoScanHD_Array/NetAffx/ and > put annotation file CytoScanHD_Array_annot.csv there. > > I ran AffymetrixNetAffxCsvFile$byChipType("CytoScanHD_Array") at parent > directory of annotationData. > > It gave error "Error in grep(pattern, basename(files0)) : invalid > 'pattern' argument" > > Does anyone know what was wrong ? > > Br, > C.Y > -- -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to firstname.lastname@example.org To unsubscribe and other options, go to http://www.aroma-project.org/forum/ --- You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group. To unsubscribe from this group and stop receiving emails from it, send an email to aroma-affymetrix+unsubscr...@googlegroups.com. For more options, visit https://groups.google.com/d/optout.