Hi dear professor Henrik Bengtsson, When I was declaring the raw data set of CytoScan HD Array with aroma.affymetrix, I'm encountering the following errors:
*"Error: object 'csC' not found." * *I have searched the forum, **unfortunately, I can't solve this problem.* *Could you give me some suggestions and help me solve it ?* *The following are the R code of mine:* *> setwd("G:/")>library("aroma.affymetrix")* *>log <- verbose <- Arguments$getVerbose(-8, timestamp=TRUE)* *>options(digits=4)* *>cdf <- AffymetrixCdfFile$byChipType("CytoScanHD_Array")* *>gi <- getGenomeInformation(cdf)* *>si <- getSnpInformation(cdf)* *>acs <- AromaCellSequenceFile$byChipType(getChipType(cdf))* *>csR <- AffymetrixCelSet$byName("CytoScanHD_Array", cdf=cdf)* *>acc <- AllelicCrosstalkCalibration(csR, model="CRMAv2")* *>csC <- process(acc, verbose=verbose)* *> print(csC)* > sessionInfo() R version 3.2.2 (2015-08-14) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 7 x64 (build 7601) Service Pack 1 locale: [1] LC_COLLATE=English_United States.1252 [2] LC_CTYPE=English_United States.1252 [3] LC_MONETARY=English_United States.1252 [4] LC_NUMERIC=C [5] LC_TIME=English_United States.1252 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] aroma.light_2.4.0 aroma.affymetrix_2.14.0 affxparser_1.42.0 [4] aroma.core_3.0.0 R.devices_2.13.2 R.filesets_2.10.0 [7] R.utils_2.2.0 R.oo_1.19.0 R.methodsS3_1.7.0 loaded via a namespace (and not attached): [1] matrixStats_0.50.1 codetools_0.2-14 listenv_0.6.0 future_0.10.0 [5] digest_0.6.8 R.huge_0.9.0 PSCBS_0.60.0 tools_3.2.2 [9] R.cache_0.12.0 parallel_3.2.2 base64enc_0.1-3 aroma.apd_0.6.0 [13] R.rsp_0.21.0 globals_0.6.0 DNAcopy_1.42.0 CEL format raw data are locate in "G:/rawData/CytoScanHD_Array/CytoScanHD_Array" <https://lh3.googleusercontent.com/-BolmlflM140/VpNaxx3h3BI/AAAAAAAAAAM/9jVOdDWKWYw/s1600/%25E6%258D%2595%25E8%258E%25B7.JPG> Looking forward your replay. Thank you very much. -- -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/ --- You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group. To unsubscribe from this group and stop receiving emails from it, send an email to aroma-affymetrix+unsubscr...@googlegroups.com. For more options, visit https://groups.google.com/d/optout.