On Thu, 18 Jul 2002 09:38:08 +0100, Milo Thurston wrote: > Has anyone had any success running netblast (see > ftp://ftp.ncbi.nih.gov/blast/network/netblast/README) > with Artemis? > It seems possible to run it from the various run_blast > scripts, but the output I get after running blast > (e.g. in blastn/<seq_name>.out) is:
> Searching... please wait... This works fine here. Does netblast run OK for you on the command line? Which database are you blasting against? > Is there a way of getting artemis to wait for the results > to return from NCBI? Artemis will run the blast (or netblast) job in the background and then alert the user with a "blastp process completed" when the background job finishes. netblast returns when the blast search finishes in the same way that blastall does so you should be able to replace blastall with netblast transparently. Kim.
