[artemis-users] Huge data problem

[kmwu]

Hi Kim,

 

I'm using artemis 5b under solaris 8.

How many ENTRY could be imported into a single Artemis Entry Edit window?

Dose it limit the chars or feature number read by a single Artemis Entry Edit window?

 

I tried to import one GFF file with more than 20,000 features into a ~3.5 MB fasta entry but failed without any  massage.

Then I splitted the GFF file into 5 smaller GFF files with about 5000 features each.

I can import at most 3 smaller GFF files. And at the same time, the command line showed error messages:

java.lang.OutOfMemoryError
java.lang.OutOfMemoryError
java.lang.OutOfMemoryError
java.lang.OutOfMemoryError
Exception occurred during event dispatching:
java.lang.OutOfMemoryError
java.lang.OutOfMemoryError
java.lang.OutOfMemoryError
java.lang.OutOfMemoryError
java.lang.OutOfMemoryError

 

Does artemis support mass data set?

I'm sure the memory was not ran out when the "OutOfMemory" error showed up.

 

Keh-Ming Wu

Yang-Ming Genome Sequencing Center
National YANG-MING University
886-2-28267000 ext. 5329