Hi. On Wed, 26 Feb 2003 21:01:45 +0800, kmwu wrote:
> Hi Kim, > I'm using artemis 5b under solaris 8. > How many ENTRY could be imported into a single Artemis Entry Edit window? > Dose it limit the chars or feature number read by a single Artemis Entry Edit window? > I tried to import one GFF file with more than 20,000 features into a ~3.5 MB fasta > entry but failed without any massage. > Then I splitted the GFF file into 5 smaller GFF files with about 5000 features each. > I can import at most 3 smaller GFF files. And at the same time, the command line > showed error messages: > java.lang.OutOfMemoryError > java.lang.OutOfMemoryError > Does artemis support mass data set? > I'm sure the memory was not ran out when the "OutOfMemory" error showed up. Artemis should be able to read files of any size. The Java Virtual Machine on UNIX has a fixed upper limit on the amount of memory that is available for applications, but this limit can be changed at runtime. As shipped Artemis will use a maximum of 150 megs of memory. You will need to change the art script to fix this problem. Find the line that reads: MEM="-mx150m -ms20m" and change the 150 to a bigger number (try 500 or 1000). Kim.
