Hello
I use the latest release of Artemis (artemis_java2) with java 1.4.1_02 on a
Suse 8.2 linux plateform.
I have problems with some EnsEMBL flat files in EMBL flat file format.
I get these kind of messages and don't understand where the problems come
from:
starting Artemis with flags: -mx850m -ms20m -noverify
Exception in thread "main" java.lang.ArrayIndexOutOfBoundsException: 0 >= 0
at java.util.Vector.elementAt(Vector.java:427)
at
uk.ac.sanger.pathogens.embl.LocationParseNodeVector.elementAt(LocationParseNodeVector.java:57)
at
uk.ac.sanger.pathogens.embl.LocationParseNode.getCanonical(LocationParseNode.java:469)
at uk.ac.sanger.pathogens.embl.Location.<init>(Location.java:52)
at
uk.ac.sanger.pathogens.embl.PublicDBStreamFeature.setFromStream(PublicDBStreamFeature.java:293)
at
uk.ac.sanger.pathogens.embl.PublicDBStreamFeature.readFromStream(PublicDBStreamFeature.java:129)
at
uk.ac.sanger.pathogens.embl.EmblStreamFeature.readFromStream(EmblStreamFeature.java:99)
at
uk.ac.sanger.pathogens.embl.LineGroup.readNextLineGroup(LineGroup.java:91)
at
uk.ac.sanger.pathogens.embl.SimpleDocumentEntry.<init>(SimpleDocumentEntry.java:74)
at
uk.ac.sanger.pathogens.embl.PublicDBDocumentEntry.<init>(PublicDBDocumentEntry.java:68)
at
uk.ac.sanger.pathogens.embl.EmblDocumentEntry.<init>(EmblDocumentEntry.java:58)
at
uk.ac.sanger.pathogens.embl.DocumentEntryFactory.makeDocumentEntry(DocumentEntryFactory.java:121)
at
diana.components.EntryFileDialog.getEntryFromFileHelper(EntryFileDialog.java:201)
at
diana.components.EntryFileDialog.getEntryFromFile(EntryFileDialog.java:254)
at
diana.components.ArtemisMain.readArgsAndOptions(ArtemisMain.java:217)
at Diana.main(Diana.java:60)
What can I do ?
--
Sebastien MORETTI
CNRS - IGS
31 chemin Joseph Aiguier
13402 Marseille cedex 20
tel. 04 91 16 44 55
06 61 88 59 00
