(And Kim's message didn't get to the mailing list as it was sent from his
flymine address)
Forwarding (again) as it is of general interest.
---------- Forwarded message ----------
Date: Wed, 28 Apr 2004 11:07:49 +0100
From: Kim Rutherford <[EMAIL PROTECTED]>
To: [EMAIL PROTECTED]
Cc: [EMAIL PROTECTED], The Artemis Mailing List <[EMAIL PROTECTED]>
Subject: Re: BOUNCE [EMAIL PROTECTED]: Message too long
(>40000 chars)
(Your message didn't get to the mailing list because it was too long)
> Hi All,
> When I use a megablast output file as input for ACT- all the matches seem to
> be 100% with a score of 100% despite the scores being a whole range:
> 'U00096'=='+AE006468' (4206202 289656 4207315 290768) 22
> 'U00096'=='+AE006468' (4205421 288876 4206178 289632) 21
> 'U00096'=='+AE006468' (4207500 291112 4208161 291773) 14
> 'U00096'=='+AE006468' (4208174 291887 4208790 292503) 6
> 'U00096'=='+AE006468' (4208799 292595 4209122 292919) 10
> 'U00096'=='+AE006468' (4209133 292932 4210556 294355) 24
> 'U00096'=='+AE006468' (4210613 294513 4210748 294648) 1
> 'U00096'=='+AE006468' (4164090 289031 4164691 289632) 14
> Is there a problem at my end or with ACT itself?
> Many thanks for any advice,
> Anthony
> P.S: I attach the whole megablast output:
Hi. The problem is with ACT - currently it ignores the last column of
the megablast output and uses 100 as the score.
Kim.
