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Hi, I am first time artemis user and asking my be trivial things
but I didnt found answers from mailing list archive. So, I am using artemis ver6 on LINUX and had poblems with correct positioning of the
blast search results by artemis according
to the entry sequence. I run blast against entri sequence ( blastall –p blastn –m8 –e
1e-10 –i my_input.fa –d my_blastdb
> my_input.blastn ) The result file is
recognized but artemis shows that match is started from the beginning of query
sequence what is not true. It did not help if I
use MPScrunch ( wiht options –x ot –d) for converting blast output in to another format. Is it normal behaivor of artemis or I missed something
important? From examples I see that blast output (example.blastn.tab) is
converted in to EMBL feature format. Is it the solution? I
didnt found converters jet. Thanks Tõnu Margus |
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