> How is possible to integrate hmmpfam searches in to artemis in similar way > like blast searches (I mean under run menu)? So that you can select ORF > and run against pfam database.
Yes it is possible. In particular, you would have to write a script called etc/run_hmmpfam, using one of the other run_XXXX scripts as an example. And add 'hmmpfam' item to the 'feature_protein_programs' variable in the etc/options file. You should read http://www.sanger.ac.uk/Software/Artemis/v7/manual/runmenu.html and look in the etc/ directory of Artemis. -- Torsten Seemann <[EMAIL PROTECTED]> Victorian Bioinformatics Consortium _______________________________________________ Artemis-users mailing list [email protected] http://lists.sanger.ac.uk/mailman/listinfo/artemis-users
