Title: Re: [Artemis-users] Preparing Artemis annotation for Sequin submission
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Hello!
I am the one who wrote the program that converts an
embl file to sequin table format.
If you have questions or need any assistance in
using the program just ask me.
You should definitely not do a copy and paste
orgy.
Regards from germany,
Michael.
----- Original Message -----
Sent: Monday, October 23, 2006 10:31
AM
Subject: Re: [Artemis-users] Preparing
Artemis annotation for Sequin submission
Hi Jay
This web service may be of some use to
you:
http://nbc11.biologie.uni-kl.de/framed/left/menu/auto/right/sequin/index_sequin.shtml
?
Regards
Tim Carver
On 20/10/06 19:48, "Jay
McCarren" <[EMAIL PROTECTED]>
wrote:
Hello,
I'm in the process of submitting a
number of fosmid sequences and associated annotation to Genbank using the
NCBI Sequin submission software. I'm having difficulty porting my
annotation into Sequin. So far I've only been partially successful by
writing a file with the amino acids of all the CDSs and then importing this
file in the Proteins tab during the sequin submission. This locates
the CDS on my nucleotide sequence but I lose all the other important
annotation. Is there a better way to go about this? Is there
some way to generate a feature table? If so, how is this then imported
in Sequin? It seems like there must be a more automated way about this
than the cut and paste operation I'm about to embark on.
Thanks for
the
help,
Jay
______________________________
Jay
McCarren
Postdoctoral Associate
Massachusetts Institute of
Technology
Room 48-336
15 Vassar St.
Cambridge, MA 02139
Lab:
(617) 258-7407
Fax: (617) 253-7475
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