Tim Thanks for your comments. I believe I did not properly state the issue of settings being applied. This happens when I am within the same session. I try to apply some cutoffs and as soon as I am done applying them, the settings just revert back to the default. I am using java 1.5.0 already. I will try to run this in a Linux machine, as well as try webact and get back to you on this issue. Regards BALA.
On Mon, 6 Nov 2006, Tim Carver wrote: > Hi Balasubramanian > > > On 5/11/06 08:23, "BALASUBRAMANIAN GANESAN" <[EMAIL PROTECTED]> wrote: > > > Hello > > I am using ACT v5 for the Mac to look at a two-genome comparison to start > > off > > with. > > Many features seem to not work such as score cutoff, percent ID cutoff are > > never apllied or saved after > > setting them. > > These don't get saved between sessions anyway. > > >The sequence lock works totally at random. > > But my main problem is that the comparison view shows only the comparisons > > for > > the first 5-6k bases for > > 2.5 Mb genomes. Why is this the case? > > This does sound strange. This should be fine as long as you use the output > of BLAST version 2.2.2 or better. The blastall command must be run with the > -m 8 flag which generates one line of information per HSP. > > You could try on of the on-line versions for generating the comparison > files, e.g. webact: > > http://www.webact.org/WebACT/home > > Also make sure you are using java1.4.2 or higher (from apple > http://www.apple.com/macosx/features/java/). > > Regards > Tim > > > _______________________________________________ Artemis-users mailing list [email protected] http://lists.sanger.ac.uk/mailman/listinfo/artemis-users
