Hi Simon ACT uses the output from BLAST. So it is only a local alignment. You probably need to run a global alignment on your sequences to get the overall percentage identity.
Regards Tim On 4/11/08 08:42, "Simon Baxter" <[EMAIL PROTECTED]> wrote: > Hello, > I'm comparing two rather divergent haplotypes, around 150 kb each, > using ACT. Is it possible to generate an overall percentage identity > between the two sequences, across the entire region? Or does ACT > always limit these percent id statistics to smaller, highly conserved > blocks of sequence? > > Thanks > Simon _______________________________________________ Artemis-users mailing list Artemis-users@sanger.ac.uk http://lists.sanger.ac.uk/mailman/listinfo/artemis-users
