Dear Sir,
I have generated a alignment file in .bam format(.bam format is sorted and 
I am facing problem while viewing it in artemis.
1. loaded reference file in .gff format.
2. From "Read BAM/VCF" tab, I load .bam file

error is generated "length of sequence loaded does not match the length of the 
default reference sequence in the BAM (psu|M76611)"

but  psu|M76611 which is mitochondrial genome of plasmodium is of same length 
in GFF file and the file from which index of .bam was generated.

Plz help to trouble-shoot this issue.

Zeenia Jagga

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