You need to read in the bgzip'ed vcf file not the tabix index file. It is
expecting a file to be loaded with the suffix .vcf.gz rather than .tbi. It
will then automatically look for the index (.tbi) file in the same directory
as the VCF file.
On 3/17/12 2:48 PM, "Louis Grandjean" <drlouisgrandj...@hotmail.com> wrote:
> Dear All,
> I'm new to Artemis and have had problems reading in vcf files. I've indexed
> the vcf files using bgzip and tabix as detailed in the manual and I'm also
> using the Artemis developer version 14.0. First I load in the reference embl
> file with no problems then go to File > Read VCF and select my .tbi file
> output from tabix. However nothing appears on the screen. I'm not sure where
> I'm going wrong. Any help would be gratefully appreciated.
> Best wishes
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