> So my questions are:
>       • Is this just an unlucky flash problem or could there be something 
> more sinister?

Your logs seem to show flash issues:
--
kernel: ata1: exception Emask 0x10 SAct 0x0 SErr 0x90202 action 0xe frozen
kernel: ata1: irq_stat 0x00400000, PHY RDY changed
kernel: ata1: SError: { RecovComm Persist PHYRdyChg 10B8B }
kernel: ata1: hard resetting link
kernel: ata1: SATA link down (SStatus 0 SControl 300)
kernel: ata1: hard resetting link
--
Though your hard reboot forced a e2fsck and seemed to (temporarily ?) fix 
things.

On my healthy APU2, the "ata1" logs should be minimal:
--
pbx4 ~ # dmesg | grep ata1
[    0.942110] ata1: SATA max UDMA/133 abar m1024@0xfeb25000 port 0xfeb25100 
irq 19
[    1.263014] ata1: SATA link up 6.0 Gbps (SStatus 133 SControl 300)
[    1.268165] ata1.00: ATA-10: SB mSATA SSD, S9FM02.8, max UDMA/133
[    1.272969] ata1.00: 31277232 sectors, multi 16: LBA48 NCQ (depth 31/32), AA
[    1.279020] ata1.00: configured for UDMA/133
--


>       • Why did it need to do a Memtest when it rebooted. Is this a BiOS 
> thing?
> 

Judging by the "Memtest86+ 5.01 coreboot" version, that is a part of the 
coreboot BIOS of the APU2 ... somehow it got triggered, usually a keypress, 
possibly random noise off the serial cable.

BTW, once Memtest86+ is started to runs forever until the <ESC> or such key is 
hit.


Not related, but for production I like to comment-out the /etc/rc.modules NIC 
drivers that are not used.

For the APU2's /etc/rc.modules (edit directly) only the "igb" NIC is needed, 
you can comment-out the others.

Lonnie

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