I posted a bunch of thoughts for discussion on the forum:
https://discuss.avogadro.cc/t/improving-avogadro-v2-workflow-plugins/2645

My goal is that by the end of April, we'll have a full workflow/command API 
'handshake' worked out.

If people would like to help, I can see a few tasks that would help:
- Improving CJSON to offer syntax for multiple coordinate sets
- Adding support for fragments / residues
- Adding support for undo/redo of selections, including saving selection state 
to CJSON
(this would be cool, since plugins could add a new fragment and select it)

Some areas of discussion:
- How can a plugin pass back custom data/labels for an atom. For example, RDKit 
can assign R/S stereochemistry :-)
- How can a plugin pass back custom data for a molecule (e.g., dipole moment 
vector, an IUPAC name, etc.)
etc.

Thoughts?

-Geoff
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