Hi everyone,
The base-users forum seems to be down so I’ll have to put my question here – sorry if it has already been dealt with.
I’m trying to get mage-ml export working. I updated my mysql-connector to 3.1.13-bin.jar, put it into pathToBase/include/java and renamed it with the old jar file name (as per previous posting), but I now see the following:
MAGE-ML document not created yet [Create]
MAGE-ML log file Last changed 2006-06-21 11:29:21
dirname= /applications/base/data/mageml/0/19/experiment19
stage= all
dtdpath= /applications/base/misc/MAGE-ML.dtd
created mageobjects
writeMAGEML
[Fatal Error] experiment19.xml:1:3104: The entity name must immediately follow the '&' in the entity reference.
org.xml.sax.SAXParseException: The entity name must immediately follow the '&' in the entity reference.
at org.apache.xerces.parsers.DOMParser.parse(Unknown Source)
at org.apache.xerces.jaxp.DocumentBuilderImpl.parse(Unknown Source)
at javax.xml.parsers.DocumentBuilder.parse(DocumentBuilder.java:151)
at BASEutils.repairMAGEML(BASEutils.java:961)
at exportMAGEML.main(exportMAGEML.java:78)
validate
error: Attribute "identifier" is required and must be specified for element type "MAGE-ML".
org.xml.sax.SAXParseException: Attribute "identifier" is required and must be specified for element type "MAGE-ML".
at org.apache.xerces.parsers.DOMParser.parse(Unknown Source)
at org.apache.xerces.jaxp.DocumentBuilderImpl.parse(Unknown Source)
at javax.xml.parsers.DocumentBuilder.parse(DocumentBuilder.java:151)
at BASEutils.validate(BASEutils.java:1137)
at exportMAGEML.main(exportMAGEML.java:79)
So, what’s all this about then?!
Best regards,
Mark
******************************************
Dr Mark Alston,
Computational Biologist,
Institute of Food Research,
Norwich Research Park, Colney,
Norwich NR4 7UA, UK.
Tel +44 (0)1603 251432
e-mail [EMAIL PROTECTED]
e-disclaimer at http://www.ifr.ac.uk/edisclaimer/
******************************************
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