Hi all, In the analysis steps part of BASE 1.2.x, is there a way to create a reporter list such that X out of Y assays satisfy some filter condition, where 1 < X < Y ?
I already know how to do it where X=1 or X=Y. For example: 1. Reporters where at least one assay has a twofold change Filter on "ratio not between 0.5, 2", create reporter list R with results, then filter original set on "reporter list present in R". 2. Reporters where *all* assays have max intensity >= 100: Filter on "max(Ch1,Ch2) < 100", create reporter list S with results, then filter original set on "reporter list absent in S". Quite often you want to filter somewhere in between, i.e. at least half of the assays should show X-fold changes, or whatever. It would not be hard to write a plugin to do this, but I haven't written any plugins yet. So I wondered if there were any GUI tricks I had missed. Failing that I'll write a pseudo-plugin (a script which takes a custom BASE file and dumps a reporter list) and worry about configuring it as a plugin at a later date. Also, if anyone has an 'averaging over replicates' plugin (based on a specified sample annotation), I would be very grateful. Installing such a plugin would help me figure out how to write one. cheers, Bob. -- Bob MacCallum | VectorBase Developer | Kafatos/Christophides Groups | Division of Cell and Molecular Biology | Imperial College London | Phone +442075941945 | Email [EMAIL PROTECTED] ------------------------------------------------------------------------- Take Surveys. Earn Cash. Influence the Future of IT Join SourceForge.net's Techsay panel and you'll get the chance to share your opinions on IT & business topics through brief surveys -- and earn cash http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to [EMAIL PROTECTED]
