Hi,
We have just installed the latest version of BASE2 (2.0.2 binaries) and
are running some of our own client code against it. BASE is running
under Tomcat 5.5.20 and with a MySQL 5.0.22 backend.
When our code calls Application.start(), the following exception is
thrown:
SEVERE: Cannot cache an unknown entity:
net.sf.basedb.core.data.AnnotationTypeCategoryData
net.sf.basedb.core.BaseException: Cannot cache an unknown entity:
net.sf.basedb.core.data.AnnotationTypeCategoryData
at net.sf.basedb.core.HibernateUtil.init(HibernateUtil.java:166)
at net.sf.basedb.core.Application.start(Application.java:333)
at net.sf.basedb.core.Application.start(Application.java:271)
at
sbrn.workflows.base.auth.BaseAuthenticator.login(BaseAuthenticator.java:
32)
at
sbrn.workflows.base.webservice.BaseWebService.getRawDataByExperimentName
(BaseWebService.java:78)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.jav
a:39)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessor
Impl.java:25)
at java.lang.reflect.Method.invoke(Method.java:585)
at
org.apache.axis.providers.java.RPCProvider.invokeMethod(RPCProvider.java
:397)
at
org.apache.axis.providers.java.RPCProvider.processMessage(RPCProvider.ja
va:186)
at
org.apache.axis.providers.java.JavaProvider.invoke(JavaProvider.java:323
)
at
org.apache.axis.strategies.InvocationStrategy.visit(InvocationStrategy.j
ava:32)
at org.apache.axis.SimpleChain.doVisiting(SimpleChain.java:118)
at org.apache.axis.SimpleChain.invoke(SimpleChain.java:83)
at
org.apache.axis.handlers.soap.SOAPService.invoke(SOAPService.java:454)
at org.apache.axis.server.AxisServer.invoke(AxisServer.java:281)
at
org.apache.axis.transport.http.AxisServlet.doPost(AxisServlet.java:699)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:709)
at
org.apache.axis.transport.http.AxisServletBase.service(AxisServletBase.j
ava:327)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:802)
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(Applica
tionFilterChain.java:252)
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilt
erChain.java:173)
at
org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValv
e.java:213)
at
org.apache.catalina.core.StandardContextValve.invoke(StandardContextValv
e.java:178)
at
org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java
:126)
at
org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java
:105)
at
org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.
java:107)
at
org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:1
48)
at
org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:86
9)
at
org.apache.coyote.http11.Http11BaseProtocol$Http11ConnectionHandler.proc
essConnection(Http11BaseProtocol.java:664)
at
org.apache.tomcat.util.net.PoolTcpEndpoint.processSocket(PoolTcpEndpoint
.java:527)
at
org.apache.tomcat.util.net.LeaderFollowerWorkerThread.runIt(LeaderFollow
erWorkerThread.java:80)
at
org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPool
.java:684)
at java.lang.Thread.run(Thread.java:595)
Caused by: org.hibernate.MappingException: Cannot cache an unknown
entity: net.sf.basedb.core.data.AnnotationTypeCategoryData
at
org.hibernate.cfg.Configuration.setCacheConcurrencyStrategy(Configuratio
n.java:1834)
at
org.hibernate.cfg.Configuration.parseSessionFactory(Configuration.java:1
440)
at
org.hibernate.cfg.Configuration.doConfigure(Configuration.java:1414)
at
org.hibernate.cfg.Configuration.doConfigure(Configuration.java:1390)
at
org.hibernate.cfg.Configuration.configure(Configuration.java:1310)
at
org.hibernate.cfg.Configuration.configure(Configuration.java:1296)
at net.sf.basedb.core.HibernateUtil.init(HibernateUtil.java:159)
... 34 more
Looks to me like Hibernate is trying to cache something it has no
knowledge of. There doesn't seem to be anything on the lists about this
particular problem -- can anyone help with this at all?
Thanks
Micha
==================================
Dr Micha M Bayer
Bioinformatics Specialist
Genetics Programme
The Scottish Crop Research Institute
Invergowrie
Dundee
DD2 5DA
Scotland, UK
Telephone +44(0)1382 562731 ext. 2309
Fax +44(0)1382 562426
http://www.scri.sari.ac.uk/MichaBayer.htm
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