Micha Bayer wrote: > Hi, > > We have just installed the latest version of BASE2 (2.0.2 binaries) and > are running some of our own client code against it. BASE is running > under Tomcat 5.5.20 and with a MySQL 5.0.22 backend. > > When our code calls Application.start(), the following exception is > thrown:
Maybe it is some classpath problem. Your classpath should contain all JAR files in the /www/WEB-INF/lib directory as well as the /www/WEB-INF/classes directory. See for example the /bin/includes file which sets up the classpath for the installation and migration program. Caching information is partly kept in the ehcache.xml file and partly in the hibernate.cfg.xml file (both should be located in the /www/WEB-INF/classes directory). /Nicklas > SEVERE: Cannot cache an unknown entity: > net.sf.basedb.core.data.AnnotationTypeCategoryData > net.sf.basedb.core.BaseException: Cannot cache an unknown entity: > net.sf.basedb.core.data.AnnotationTypeCategoryData > at net.sf.basedb.core.HibernateUtil.init(HibernateUtil.java:166) > at net.sf.basedb.core.Application.start(Application.java:333) > at net.sf.basedb.core.Application.start(Application.java:271) > at > sbrn.workflows.base.auth.BaseAuthenticator.login(BaseAuthenticator.java: > 32) > at > sbrn.workflows.base.webservice.BaseWebService.getRawDataByExperimentName > (BaseWebService.java:78) > at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) > at > sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.jav > a:39) > at > sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessor > Impl.java:25) > at java.lang.reflect.Method.invoke(Method.java:585) > at > org.apache.axis.providers.java.RPCProvider.invokeMethod(RPCProvider.java > :397) > at > org.apache.axis.providers.java.RPCProvider.processMessage(RPCProvider.ja > va:186) > at > org.apache.axis.providers.java.JavaProvider.invoke(JavaProvider.java:323 > ) > at > org.apache.axis.strategies.InvocationStrategy.visit(InvocationStrategy.j > ava:32) > at org.apache.axis.SimpleChain.doVisiting(SimpleChain.java:118) > at org.apache.axis.SimpleChain.invoke(SimpleChain.java:83) > at > org.apache.axis.handlers.soap.SOAPService.invoke(SOAPService.java:454) > at org.apache.axis.server.AxisServer.invoke(AxisServer.java:281) > at > org.apache.axis.transport.http.AxisServlet.doPost(AxisServlet.java:699) > at javax.servlet.http.HttpServlet.service(HttpServlet.java:709) > at > org.apache.axis.transport.http.AxisServletBase.service(AxisServletBase.j > ava:327) > at javax.servlet.http.HttpServlet.service(HttpServlet.java:802) > at > org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(Applica > tionFilterChain.java:252) > at > org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilt > erChain.java:173) > at > org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValv > e.java:213) > at > org.apache.catalina.core.StandardContextValve.invoke(StandardContextValv > e.java:178) > at > org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java > :126) > at > org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java > :105) > at > org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve. > java:107) > at > org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:1 > 48) > at > org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:86 > 9) > at > org.apache.coyote.http11.Http11BaseProtocol$Http11ConnectionHandler.proc > essConnection(Http11BaseProtocol.java:664) > at > org.apache.tomcat.util.net.PoolTcpEndpoint.processSocket(PoolTcpEndpoint > .java:527) > at > org.apache.tomcat.util.net.LeaderFollowerWorkerThread.runIt(LeaderFollow > erWorkerThread.java:80) > at > org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPool > .java:684) > at java.lang.Thread.run(Thread.java:595) > Caused by: org.hibernate.MappingException: Cannot cache an unknown > entity: net.sf.basedb.core.data.AnnotationTypeCategoryData > at > org.hibernate.cfg.Configuration.setCacheConcurrencyStrategy(Configuratio > n.java:1834) > at > org.hibernate.cfg.Configuration.parseSessionFactory(Configuration.java:1 > 440) > at > org.hibernate.cfg.Configuration.doConfigure(Configuration.java:1414) > at > org.hibernate.cfg.Configuration.doConfigure(Configuration.java:1390) > at > org.hibernate.cfg.Configuration.configure(Configuration.java:1310) > at > org.hibernate.cfg.Configuration.configure(Configuration.java:1296) > at net.sf.basedb.core.HibernateUtil.init(HibernateUtil.java:159) > ... 34 more > > > > Looks to me like Hibernate is trying to cache something it has no > knowledge of. There doesn't seem to be anything on the lists about this > particular problem -- can anyone help with this at all? > > Thanks > > Micha > > ================================== > Dr Micha M Bayer > Bioinformatics Specialist > Genetics Programme > The Scottish Crop Research Institute > Invergowrie > Dundee > DD2 5DA > Scotland, UK > Telephone +44(0)1382 562731 ext. 2309 > Fax +44(0)1382 562426 > http://www.scri.sari.ac.uk/MichaBayer.htm > ============================= > > _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ > > DISCLAIMER: > > This email is from the Scottish Crop Research Institute, but the views > expressed by the sender are not necessarily the views of SCRI and its > subsidiaries. This email and any files transmitted with it are confidential > to the intended recipient at the e-mail address to which it has been > addressed. 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