Hi Steve, BASE 1.2 plug-ins can be made to run in BASE 2. I have not tried to get a 1.2 plug-in to run in BASE 2 myself yet, but Johan Enell is doing the major coding for the BASE 1 plug-in executer.
TMEV is already in BASE 2.2 If you click the third icon in the bioassay set view of an experiment you will initiate MeV. MeV is running as an Java web start application, and the bioassay set is automatically loaded at MeV start. You'll have to accept the certificate. You can perform analysis in MeV but the results cannot (currently) be stored back to BASE but saving to the local disk works. I forgot to add our customized version of MeV to BASE-hacks page. I'll add the code to BASE-hacks. Cheers, Jari Steve Taylor wrote: > Hi, > > Can anyone confirm if it is possible to run BASE 1.2 plugins reliably in BASE > 2+? I noticed on the web site it says: > > "Plug-ins created for BASE 1.2 can be made to work in BASE 2 using the > Base1PluginExecuter plug-in (this is still in development phase)." > > Also is TMEV planned to be integrated into BASE2? On > > http://base.thep.lu.se/chrome/site/doc/admin/plugin_configuration/coreplugins.html > > it says: > > "MeV is a versatile microarray data analysis tool, incorporating > sophisticated algorithms for clustering, visualization, classification, > statistical analysis and biological theme discovery, > http://www.tm4.org. We use a modified version of MeV and provide information > about the changes at http://trac.thep.lu.se/tracs/BASE-hacks."; > > but the link doesn't work. > > Thanks for any advice, > > Steve > ------------------------------------------------------------------ > Medical Sciences Division > Weatherall Institute of Molecular Medicine/Sir William Dunn School > Oxford University > > > ------------------------------------------------------------------------- > Take Surveys. Earn Cash. Influence the Future of IT > Join SourceForge.net's Techsay panel and you'll get the chance to share your > opinions on IT & business topics through brief surveys-and earn cash > http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV > _______________________________________________ > The BASE general discussion mailing list > basedb-users@lists.sourceforge.net > unsubscribe: send a mail with subject "unsubscribe" to > [EMAIL PROTECTED] > -- Jari Hakkinen, PhD Complex Systems Division mailto:[EMAIL PROTECTED] Department of Theoretical Physics phone: +46 (0)46 2229347 Lund University fax: +46 (0)46 2229686 Solvegatan 14a, SE-223 62 Lund, Sweden http://www.thep.lu.se ------------------------------------------------------------------------- Take Surveys. Earn Cash. Influence the Future of IT Join SourceForge.net's Techsay panel and you'll get the chance to share your opinions on IT & business topics through brief surveys-and earn cash http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to [EMAIL PROTECTED]
