Julie Naito wrote:
> Is this the case with BASE version 1.2.16?

Sorry, I assumed you were asking about BASE 2.

I guess the statement about that the same sample must end up in the same 
channel is true also for BASE 1. I don't know if that requires different 
file formats or not in the Imagene case, but it does for Genepix. With 
Genepix the data headers are different so the dye swapped data can't be 
imported with the same file format and vice versa. I guess that if you 
try to import you will find out how to do it.

/Nicklas

> 
>>  > Hello there.
>>>  Do you need to create two separate result file formats for 2 separate
>>>  Imagene merged raw data sets if 1 set includes a dye swap?
>> Currently there is no plugin that can import Imagene data so the
>> question is hypothetical (see http://base.thep.lu.se/ticket/450). If the
>> plugin is implemented in a similar way as the existing raw data importer
>> you will probably need two configurations. The important thing is that
>> the same sample ends up in the same channel for both hybridizations.
>>
>> /Nicklas

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